Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme96213g00001 ATGGAGTTGGAGTATTTGATTGACCACGACTTGGTGACGGAGCCATATCTCAACAACGGTCTTCACCCAATTACCCAACATGTGATGAACTACCTCCGTGTAGTTGCCAAATCTCGGCAAACACTAGAGCAAGTGTTTGAGGATTCCTCACTTTCTGAGAAGATTCTTAATATTGTGGACATATTGGAGAGTAATTTGAAAGCAAAGGCCAAATGCTGCAAGGATYCTTCTTTAGGCTATATTTTTTTGATKAATAACAACACGTATATAGTTCAGATGACCAAAKATAATGAACTAGGAATCCTTTTAGGGGATGAATGGTACCRAAAACACACACTGAATATTTCGCACTACCAGAAAAYCTTGGGCACTATGCTCCCCACTTTAGTGCAAGATATTTTCCAGTTATTGTACAACAAACAACAAATTAATAAAATAGATGAGTGGAATGTGGAAGGTTCCGAAGGAACAAAGGCGTACGAAGGAGATGTGCAGGAAATAAAAGCTTCACTCTCTCAACCACCAGAAAG 530 0.3906 MELEYLIDHDLVTEPYLNNGLHPITQHVMNYLRVVAKSRQTLEQVFEDSSLSEKILNIVDILESNLKAKAKCCKDXSLGYIFLXNNNTYIVQMTKXNELGILLGDEWYXKHTLNISHYQKXLGTMLPTLVQDIFQLLYNKQQINKIDEWNVEGSEGTKAYEGDVQEIKASLSQPPE 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme96213g00001 176 PANTHER EXOCYST COMPLEX PROTEIN EXO70 1 120 IPR004140 GO:0000145|GO:0006887
Trme96213g00001 176 SUPERFAMILY Cullin repeat-like 1 120 IPR016159 -
Trme96213g00001 176 Gene3D Exocyst complex component Exo70 1 155 - -
Trme96213g00001 176 Pfam Exo70 exocyst complex subunit 2 122 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme96213g00001 1 119 EXO70 exocyst subunit family AT1G07000 41.406 1.85e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme96213g00001 K07195 - mtr:11409580 173.711