Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9618g00001 ATGCTCGGAATCATCTACAGAGATCTCAAACCCGAGAACGTGTTGGTGAGAGAAGATGGTCACATAATGCTATCAGATTTCGACCTCTCTCTAAGGTGTGCCGTCAGTCCGACTCTAGTAAAATCAGCAAACTCTAACTTAGAGACAAAAAGCTCAGGATACTGCGTTCAACCCGCTTGCATCGAACCAACTTGTGTTATTCAGCCAGACTGCATCAAACCTTCTTGTTTCACGCCACGTTTTCTACAAAGCAAGTCCAAGAAGAAAGAAAAGAAGTTGAAACCTAAGAATGACGTGCACAATCAGGTGACACCTCTGCCCGAGCTTATGGCCGAGCCCACAAATGCCCGATCAATGTCCTTCGTAGGCACGCACGAGTACCTTGCGCCTGAAATCATCAAAGGTGAAGGTCATGGCAGTGCTGTAGACTGGTGGACATTTGGGATATTCTTATACGAGCTTTTGTTCGGTAGAACGCCATTCAAAGGTTCGGCAAATCGGGCAACTTTATTTAATGTAGTTGGGCAGCCCTTAAGATTTCCGGAATCTCCAAGTGTTAGCTTTGCTGCCAGGGACTTGATTAGGGGTTTACTTGTGAAAGAGCCTCAGCATCGTCTTGCCTATAGACGTGGAGCTACGGAGATAAAACAACATCCATTCTTTCAAAATATTAACTGGGCGCTGATCCGTTGCGCCACTCCTCCGGAAGTGCC 713 0.4656 MLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSANSNLETKSSGYCVQPACIEPTCVIQPDCIKPSCFTPRFLQSKSKKKEKKLKPKNDVHNQVTPLPELMAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNINWALIRCATPPEVP 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9618g00001 238 Gene3D Transferase(Phosphotransferase) domain 1 1 238 - -
Trme9618g00001 238 ProSitePatterns Serine/Threonine protein kinases active-site signature. 4 16 IPR008271 GO:0004672|GO:0006468
Trme9618g00001 238 SMART serkin_6 1 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme9618g00001 238 PANTHER FLIPPASE KINASE 1-RELATED 1 238 - -
Trme9618g00001 238 Pfam Protein kinase domain 118 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme9618g00001 238 Pfam Protein kinase domain 3 37 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme9618g00001 238 ProSiteProfiles Protein kinase domain profile. 1 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme9618g00001 238 SUPERFAMILY Protein kinase-like (PK-like) 2 234 IPR011009 -
Trme9618g00001 238 FunFam Serine/threonine-protein kinase AGC1-7 114 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9618g00001 Trme-Chr9618 1 713 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9618g00001 1 238 AGC Kinase Gene Family AT3G27580 80.335 1.61e-142 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trme9618g00001 Pkinase 1.5e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9618g00001 K08286 - gmx:100802402 453.366