Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme96165g00001 ATGTTTCACACAGCTATATTGGCAGATGAAATGGGCCTTGGCAAAACGGTTCAGGCAATCACATATTTGACTTTGTTGAATCACTTGCACAATGATTCTGGTCCACATCTTATAGTTTGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTGAAGAAGTGGTGTCCATCCTTTTCTGTTCTTCAATATCATGGTGCTACACGCACAGCATACTGCAAGGAGTTGAACTCCTTGTCCAAGTCAGGATTGCCTCCCCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGACACAGTGCACAGCAGAAAGATGATCGTAAAATCCTGAAACGTTGGAAGTGGAGCTGTGTGCTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGTTTTAGGTGGAAAAATCTGATGTCTGTTGCTCGAAGTGCGAACCAACGCTTGATGCTGACAGGGACACCACTTCAAAATGATCTACAT 486 0.4259 MFHTAILADEMGLGKTVQAITYLTLLNHLHNDSGPHLIVCPASVLENWERELKKWCPSFSVLQYHGATRTAYCKELNSLSKSGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWKWSCVLMDEAHALKDKNSFRWKNLMSVARSANQRLMLTGTPLQNDLH 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme96165g00001 162 Gene3D - 2 162 IPR038718 -
Trme96165g00001 162 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 162 IPR014001 -
Trme96165g00001 162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 161 IPR027417 -
Trme96165g00001 162 SMART ultradead3 3 162 IPR014001 -
Trme96165g00001 162 CDD DEXHc_Snf 5 162 - -
Trme96165g00001 162 Pfam SNF2-related domain 3 161 IPR000330 GO:0005524|GO:0140658
Trme96165g00001 162 PANTHER SNF2/RAD54 HELICASE FAMILY 5 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme96165g00001 Trme-Chr96165 21 683 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme96165g00001 5 161 RAD5 or RAD16-like Gene Family AT1G02670 30.539 1.07e-15 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme96165g00001 SNF2_N 1.9e-34 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme96165g00001 K14439 - gmx:100798038 320.087