Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme96142g00001 AAATCTAAAAGTTCAGAACTAGACTGGAGAAAGCGGTTTGATATTATCTGTGGTGTTGCTAGAGGGATCTTATATCTTCACCATGACTCGCGATTAAGAATCATTCATAGAGACCTAAAGGCTAGCAATGTCTTGTTGGACACGGCATTGAACCCAAAAATTGCAGATTTTGGTATGGCTAGAATGTTTGGTGGAGATCAAATTGAAGCAACTACAAAACGGGTCGTTGGAACCTACGGTTATATGTCTCCAGAGTATGCGATGGAAGGACAATTTTCGGTGAAGTCTGATGTATACAGCTTTGGAGTTTTGTTGCTAGAGATTATTACAGGCAAAAAGAACAGCGGTCAATATGAAGACTATGAATCCACAAATTTAGTTGGACATGTTAGTATTTCTTACAAACTATACTCAAATTAA 420 0.3786 KSKSSELDWRKRFDIICGVARGILYLHHDSRLRIIHRDLKASNVLLDTALNPKIADFGMARMFGGDQIEATTKRVVGTYGYMSPEYAMEGQFSVKSDVYSFGVLLLEIITGKKNSGQYEDYESTNLVGHVSISYKLYSN 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme96142g00001 139 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 7 128 - -
Trme96142g00001 139 FunFam Os07g0541700 protein 1 78 - -
Trme96142g00001 139 ProSitePatterns Serine/Threonine protein kinases active-site signature. 34 46 IPR008271 GO:0004672|GO:0006468
Trme96142g00001 139 Pfam Protein tyrosine and serine/threonine kinase 4 127 IPR001245 GO:0004672|GO:0006468
Trme96142g00001 139 SMART serkin_6 1 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme96142g00001 139 ProSiteProfiles Protein kinase domain profile. 1 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme96142g00001 139 SUPERFAMILY Protein kinase-like (PK-like) 6 131 IPR011009 -
Trme96142g00001 139 Gene3D Transferase(Phosphotransferase) domain 1 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme96142g00001 Trme-Chr96142 135 668 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme96142g00001 1 139 Receptor kinase-like Gene Family AT4G11530 66.429 2.80e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme96142g00001 PK_Tyr_Ser-Thr 3.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme96142g00001 - - lja:Lj4g3v0424250.1 233.802