Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme96136g00001 ATGGAATCGGATCTCGGCAAGCTCTTCATTGGAGGAATATCTTGGGACACTGACGAGGAACGTCTCAGGGAGTATTTTGCAACATATGGGGAGGTAATTGAGGCTGTGATCATGCGAGATCGCGCAACAGGTCGTGCTCGTGGTTTTGGATTCGTTGTCTTTGCTGATCCTGCTGTTGCTGAGAGAGTCATTATCGATAAGCACATAATTGATGGCCGCACA 222 0.482 MESDLGKLFIGGISWDTDEERLREYFATYGEVIEAVIMRDRATGRARGFGFVVFADPAVAERVIIDKHIIDGRT 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme96136g00001 74 Gene3D - 6 74 IPR012677 -
Trme96136g00001 74 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 74 IPR000504 GO:0003723
Trme96136g00001 74 SMART rrm1_1 7 74 IPR000504 GO:0003723
Trme96136g00001 74 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 73 IPR000504 GO:0003723
Trme96136g00001 74 SUPERFAMILY RNA-binding domain, RBD 4 73 IPR035979 GO:0003676
Trme96136g00001 74 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 74 - -
Trme96136g00001 74 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme96136g00001 Trme-Chr96136 305 526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme96136g00001 8 54 C2H2 Transcription Factor Family AT2G19380 44.681 7.03e-12 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme96136g00001 K14411 - cit:102624019 143.28