Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme96041g00001 AAGGAAGAAGATAAATGTAGATTTGTTCCACTCTTTCCTGATGCATTTGTGCCAGTCAAAGTCCCCTTTGAGAAAGGAGTTGGCCAGAAATTTGCTCAGCCCTCAGGAACAGGGATTGACTTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCTTCACCTGGAGAAGATGTATTTCCTCTTGTAATATGCGCTGAAACGTGTTTGGAAACTCCCTCAGCAAACGAAACTCCTAAAACTCCGGATGATTCCATGCTAGATGCATCCCCTGATTCCCCTCACATGCAAATAACTCAAGCTGTCTTGGTGAAAAGTAATGGTGATAGTGCTTTCCAGATAAAAGTAGTTAAGCAGATTCTGTGGATTGATGGTGTTCGTTATGAGTTGAGAGAGCTATATGGAATAGGAAGCTCAGAAGCTGCAGGCTTTGATGACAGTGATCCTGGAAAGGAGTGTGTAATATGCATGACTGAACCAAAGGATACGGCTGTCTTACCTTGTCGACATATGGTAAGATTTCATGTCAAAGCTAATTACATTACCTATGTATAG 552 0.4185 KEEDKCRFVPLFPDAFVPVKVPFEKGVGQKFAQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETCLETPSANETPKTPDDSMLDASPDSPHMQITQAVLVKSNGDSAFQIKVVKQILWIDGVRYELRELYGIGSSEAAGFDDSDPGKECVICMTEPKDTAVLPCRHMVRFHVKANYITYV 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme96041g00001 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 175 IPR013083 -
Trme96041g00001 183 SUPERFAMILY RING/U-box 151 175 - -
Trme96041g00001 183 PANTHER MAHOGUNIN 1 170 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme96041g00001 Trme-Chr96041 1 552 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme96041g00001 1 170 C3H Transcription Factor Family AT3G06140 58.480 2.74e-58 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme96041g00001 - - gsj:114373285 284.263