Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme96008g00001 ATGTTCCTAGTGATTTTGAGCGAGAGTGAGACCTTTCTTCAGAAAGCCATTCAAGAACAAGGCAGGGGAAGAATTATTGACACAATCAATGAGATTCAAGAGAGGCACGATGCTGTCAAAGAGTTGGAGAAGAGTCTACTGGCGTTGCACCAAGTGTTCCTCGACATGACAGTATTGGTACAATTTCAAGGTGAGCAATTGGACGATATTGAGAGCCATGTGGCGAGGGCGAGCTCGTTTGTGCAAACTGGAACTGAGCAGTTACAGACTGCAAGGAAGCACCAGAAAAACACAAGGAAATGGACCTGTTATTGTATTATACTACTTCTGATCATCGTCTTGTTTGTGGTTCTCTTCACTGTGAAACCGTGGCAACATAATGATAGTGGTGGCGGTGGGGGTAATCAGCCTGCTCCAGCGCAAACAACCCCGTCTCCTCCTCCTCCAACTCCTACTTAA 459 0.4619 MFLVILSESETFLQKAIQEQGRGRIIDTINEIQERHDAVKELEKSLLALHQVFLDMTVLVQFQGEQLDDIESHVARASSFVQTGTEQLQTARKHQKNTRKWTCYCIILLLIIVLFVVLFTVKPWQHNDSGGGGGNQPAPAQTTPSPPPPTPT 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme96008g00001 152 Pfam SNARE domain 65 117 IPR000727 -
Trme96008g00001 152 CDD SNARE_syntaxin1-like 28 90 - -
Trme96008g00001 152 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 29 91 IPR000727 -
Trme96008g00001 152 SMART tSNARE_6 24 91 IPR000727 -
Trme96008g00001 152 Gene3D - 13 122 - -
Trme96008g00001 152 SUPERFAMILY SNARE fusion complex 26 96 - -
Trme96008g00001 152 ProSitePatterns Syntaxin / epimorphin family signature. 35 74 IPR006012 GO:0005484|GO:0006886|GO:0016020
Trme96008g00001 152 PANTHER SYNTAXIN 21 113 IPR045242 -
Trme96008g00001 152 FunFam Syntaxin 132 22 122 - -
Trme96008g00001 152 Pfam Syntaxin 6 64 IPR006011 GO:0016020
Trme96008g00001 152 MobiDBLite consensus disorder prediction 128 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme96008g00001 Trme-Chr96008 133 657 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme96008g00001 3 119 SNARE and Associated Proteins AT1G61290 69.231 1.93e-54 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme96008g00001 K08486 - gmx:100809258 212.231