Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme95988g00001 ATGCAGAATCAAAAAGCAGGAATTTCTGTAACCAACAAAGGAGGAAAGTTCAAAGGAAGAAACAGAAACAGCAATAACACAAACAAATTTGTTGGTGTTAGACAAAGGCCATCAGGTAGATGGGTTGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTTGGAACATTTGAGACAGCTGAGGAAGCAGCTAGAGCTTACGATGAAGCCGCGTGTCTTCTTCGAGGTTCGAATACTCGAACCAACTTCATCACTCATGTTTCATTGGATTCTCCTCTTGCTTCTAGGATAAGAAATCTTCTTAACAACAGAAAAGGCGAAAAAAAACCGGAAAATGCTGTTGCTTCTTCAGCAA 361 0.4044 MQNQKAGISVTNKGGKFKGRNRNSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGEKKPENAVASSA 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme95988g00001 120 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 111 - -
Trme95988g00001 120 MobiDBLite consensus disorder prediction 1 33 - -
Trme95988g00001 120 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Trme95988g00001 120 CDD AP2 29 85 IPR001471 GO:0003700|GO:0006355
Trme95988g00001 120 FunFam ethylene-responsive transcription factor RAP2-11 28 87 - -
Trme95988g00001 120 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Trme95988g00001 120 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Trme95988g00001 120 Pfam AP2 domain 29 78 IPR001471 GO:0003700|GO:0006355
Trme95988g00001 120 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
Trme95988g00001 120 MobiDBLite consensus disorder prediction 1 35 - -
Trme95988g00001 120 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Trme95988g00001 120 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme95988g00001 Trme-Chr95988 16 376 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme95988g00001 16 104 AP2-EREBP Transcription Factor Family AT5G19790 75.281 3.48e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme95988g00001 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme95988g00001 K09286 - gmx:100796898 194.897