Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme955836g00001 TTAGACAATAGCATATGTTCTAGGAGAGCAGTTACGGTCATAATCACCGACGAGTGTCCCGGCTGCCCTACTGACCAGACCCACTTTGACCTCAGCGGTGCTGCTTTTGGACATATGGCTATCTCCGGCGAGAACGGTCAACTCAGGAACCGCGGTCAAATCCCTGTCATTTACCGAAGGTAA 183 0.5137 LDNSICSRRAVTVIITDECPGCPTDQTHFDLSGAAFGHMAISGENGQLRNRGQIPVIYRR 60
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme955836g00001 60 SUPERFAMILY Barwin-like endoglucanases 2 60 IPR036908 -
Trme955836g00001 60 Pfam Lytic transglycolase 4 58 IPR009009 -
Trme955836g00001 60 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 60 IPR007112 -
Trme955836g00001 60 Gene3D - 1 60 IPR036908 -
Trme955836g00001 60 PANTHER EXPANSIN-B3 3 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme955836g00001 Trme-Chr955836 1 183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme955836g00001 1 60 Expansin Gene Family AT4G28250 80.000 4.96e-30 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme955836g00001 K20628 - lja:Lj0g3v0333519.1 120.553