Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme955761g00001 ATGGCCGACGAAGCAAAAGCCAAAGGCAACGCCGCATTCTCTTCCGGTGACTTCGCAACCGCAATCCGTCACTTCTCTGAAGCCATCGATCTTTCCCCTAACAACCATGTCCTCTATTCCAACCGATCCGCAGCTTACGCTTCTCTTCAGAATTACTCCGATGCTTTAACCGACGCTAAGAAAACCGTC 189 0.5079 MADEAKAKGNAAFSSGDFATAIRHFSEAIDLSPNNHVLYSNRSAAYASLQNYSDALTDAKKTV 63
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme955761g00001 63 Gene3D Tetratricopeptide repeat domain 1 63 IPR011990 GO:0005515
Trme955761g00001 63 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Trme955761g00001 63 SUPERFAMILY TPR-like 1 63 IPR011990 GO:0005515
Trme955761g00001 63 PANTHER TPR REPEAT CONTAINING PROTEIN 2 63 - -
Trme955761g00001 63 SMART tpr_5 2 35 IPR019734 GO:0005515
Trme955761g00001 63 Pfam TPR repeat 9 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme955761g00001 Trme-Chr955761 40 228 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme955761g00001 1 63 U-box Gene Family AT3G07370 31.746 1.41e-06 41.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme955761g00001 K09553 - qsu:111991570 111.309