Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9553g00001 ATGGTTGTTTTGGAGAAGATGAAGGTCTGGGTTTTGCAAAAGAGGCAATTGATTTCAACCATAGGTTTTTCTGACGGTGGGTTGGGGAAGGTGAACAGGGATGATTCTCAACTGGTCAACGATATTGTGAAAGATGTTCGGAAAATGTTGTCCTTGAGTTATCCTAATGAACTGAAAAACTTCATTCAAAAGGCTGAAAACAATATAGATATTGAATCATTGCTGAGGGAACATAAAAAAATTGGAATATGGGGTTCGGGAGGAATGGGAAAGACAACTATAGCAAAATATTTATTTGCCTGTTACTTTGCCCAATATGACAGTGTGTGCTTATTGGAAAATGTAAGAGAAGATACAGAAAAGAATGGAGTAACGCACGTGCGTAATAAGCTTTTGTGCGAGTTATTAAGGAGACCGGTTACCGCATCTGAAGTTGTTGGACTTCACACATTCATTAAGAGGAGCTTGATTGGTAAAAAGGTTTTAGTAGTTCTTGATGATGTGGATAATATGCACCAACTAGATAATCTGTGTAGCTACCTTGATGAGCTTGGACCAGACA 562 0.3843 MVVLEKMKVWVLQKRQLISTIGFSDGGLGKVNRDDSQLVNDIVKDVRKMLSLSYPNELKNFIQKAENNIDIESLLREHKKIGIWGSGGMGKTTIAKYLFACYFAQYDSVCLLENVREDTEKNGVTHVRNKLLCELLRRPVTASEVVGLHTFIKRSLIGKKVLVVLDDVDNMHQLDNLCSYLDELGPD 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9553g00001 187 PRINTS Disease resistance protein signature 155 169 - -
Trme9553g00001 187 PRINTS Disease resistance protein signature 80 95 - -
Trme9553g00001 187 Gene3D - 38 185 IPR027417 -
Trme9553g00001 187 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 181 IPR027417 -
Trme9553g00001 187 Pfam NB-ARC domain 80 180 IPR002182 GO:0043531
Trme9553g00001 187 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 177 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9553g00001 Trme-Chr9553 28 781 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9553g00001 5 186 WRKY Transcription Factor Family AT4G12020 27.957 2.15e-16 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9553g00001 - - cam:101488696 226.483