Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme95427g00001 ATGAGCAATGAGATTGGGCAGAAACCTCCACCTTCAATACTCGTTGGTCGATTCAAGGCTTTGTTGAAGCAACGTGAAGATGATCCTAGGTTGAGAAATTCGCAACCTTCAACTGAAGAAATTGTTCAGATTTACGAGTTGTTGTTATCTGAACTCACTTGTAATGTTAAACCTATCATCACTGATCTTACAATCATTGCTGAACAACATCGTGAACATGCTAAAGGAATCGCTTATGCTATTTGCGCTCGTATTCTTGAGGTTTTCATTTTTCCCTTTTGTAAAACTCCACACCATTGTTCATATTAA 309 0.3786 MSNEIGQKPPPSILVGRFKALLKQREDDPRLRNSQPSTEEIVQIYELLLSELTCNVKPIITDLTIIAEQHREHAKGIAYAICARILEVFIFPFCKTPHHCSY 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme95427g00001 102 Gene3D - 30 98 IPR008942 -
Trme95427g00001 102 ProSiteProfiles CID domain profile. 37 102 IPR006569 -
Trme95427g00001 102 SUPERFAMILY ENTH/VHS domain 36 88 IPR008942 -
Trme95427g00001 102 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 29 88 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme95427g00001 1 87 C2H2 Transcription Factor Family AT4G04885 62.222 2.98e-23 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme95427g00001 K14400 - gmx:100787354 133.65