Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme95415g00001 GGGGCACCTGTCAAAGTCAGGAGACCTACTGATTACAACCCGTCTCTAGCTGCTACTCTAGGCCCAAGCCAACCTAACCCAAACCTGAACCTTGGTGCTGTTGGCTTAACACCTGGGTCAGCTGGTGGACTTGAAGGTCCTGATCGCATTTTTGTGGGTGGACTTCCCTATTACTTCACAGAAACTCAGATCAGGGAGCTTTTGGAAACTTTTGGTCCTCTAAGGGGTTTCGATCTGGTGAAAGATAGAGAAACAGGAAACTCAAAGGGTTATGCATTTTGTGTTTACCAAGACCTTGCAGTTACAGATATTGCCTGTGCAGCTCTGAATGGAATTAAGATGGGAGATAAGACTCTTACCGTTAGACGAGCTAATCAAGGTACAACCCAGCCTAAACCTGAACAAGAGAGCATTTTAATGCATGCACAACAGCAAATTGCTCTGCAGAAACTTATATTTCAACCAGCATTAGTGGCTACAAAGGTGGTGTGTTTAACTAATGCAGTTGCTCCTGACGAGCTCAAAGAAGATGAGGACTATGAAGAGATTAT 551 0.4465 GAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLEGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESILMHAQQQIALQKLIFQPALVATKVVCLTNAVAPDELKEDEDYEEI 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme95415g00001 183 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 126 IPR000504 GO:0003723
Trme95415g00001 183 PANTHER RNA-BINDING PROTEIN 1 183 - -
Trme95415g00001 183 SMART rrm1_1 49 122 IPR000504 GO:0003723
Trme95415g00001 183 SUPERFAMILY RNA-binding domain, RBD 44 132 IPR035979 GO:0003676
Trme95415g00001 183 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 119 IPR000504 GO:0003723
Trme95415g00001 183 Gene3D - 39 144 IPR012677 -
Trme95415g00001 183 FunFam U2 snRNP auxiliary factor large subunit 24 138 - -
Trme95415g00001 183 CDD RRM2_U2AF65 48 124 - -
Trme95415g00001 183 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme95415g00001 Trme-Chr95415 1 641 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme95415g00001 50 151 Eukaryotic Initiation Factors Gene Family AT1G22760 27.451 2.59e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme95415g00001 K12837 - qsa:O6P43_024737 354.369