Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme95401g00001 TCTAAAACATCTAGCGGCGGAAAACCTCTTCACTGGACATCATGTCTTAAAATTGCAGAAGATCTTGCCACAGGCCTTCTCTATATCCACCAAAACCCTGGCATAACTCATGGAAACCTGAAATCTTCTAATGTGTTACTTGGTGCCGACTTCGAGTCATGTCTCACCGATTACGGTCTCACCGTGTTCCTCAATCCCGACACAATGGAAGAACCAAGTGCCACTTCTTTTTTCTATAGAGCGCCCGAGTGCCGCAGTTTTCAGCGGCCACAAACTCAACCTGCTGATGTATACAGCTTTGGTGTC 306 0.4673 SKTSSGGKPLHWTSCLKIAEDLATGLLYIHQNPGITHGNLKSSNVLLGADFESCLTDYGLTVFLNPDTMEEPSATSFFYRAPECRSFQRPQTQPADVYSFGV 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme95401g00001 102 ProSiteProfiles Protein kinase domain profile. 1 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme95401g00001 102 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 8 102 IPR046959 -
Trme95401g00001 102 Gene3D Transferase(Phosphotransferase) domain 1 2 102 - -
Trme95401g00001 102 Pfam Protein kinase domain 15 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme95401g00001 102 SUPERFAMILY Protein kinase-like (PK-like) 6 102 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme95401g00001 Trme-Chr95401 404 709 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme95401g00001 1 102 Receptor kinase-like Gene Family AT1G60630 74.510 7.99e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme95401g00001 Pkinase 1.2e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme95401g00001 - - gmx:100809866 203.371