Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme95389g00001 TTTGGTTGCAATATATGTCACAAGGTGTTGGCTTCCCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGCCTGCTTGGATGGTGCCTTTTCTGGCCAAAGTTATATCAGGAATAGAACAACCCAAAACGGACGCTCTTTGCGGACAAAGAAGAACATTATGAAATGCCCTACTTGTTCAACTGACATAGCTGATTATCTTCAGAATCCCCAGGACTTATATTTGCTCGAATGA 237 0.4262 FGCNICHKVLASPLTTPCAHNFCKACLDGAFSGQSYIRNRTTQNGRSLRTKKNIMKCPTCSTDIADYLQNPQDLYLLE 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme95389g00001 78 ProSiteProfiles Zinc finger RING-type profile. 3 61 IPR001841 -
Trme95389g00001 78 SUPERFAMILY RING/U-box 2 64 - -
Trme95389g00001 78 SMART ring_2 3 60 IPR001841 -
Trme95389g00001 78 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 72 IPR045134 -
Trme95389g00001 78 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 76 IPR013083 -
Trme95389g00001 78 ProSitePatterns Zinc finger RING-type signature. 18 27 IPR017907 -
Trme95389g00001 78 Pfam RING-type zinc-finger 3 58 IPR027370 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme95389g00001 1 72 C2H2 Transcription Factor Family AT5G39550 59.722 2.66e-27 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme95389g00001 K10638 - gmx:100781044 130.954