Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme95299g00001 ATGACAACTGATCTTAGACAACTAGTAAACGGAACAAGATCAACCCATTTTCCATCTATACCGGCTACCGCGGAGGATTTTTTCCCCGGTCACCGGAATCTAACTGCTTTGTTAACTAATTCTCAACAAACACATCATCAAAACGAACAACAACAACAATATGAGATGATGATGTTGGGTCGTGGAGTTGTACTTGAAGATTTCAATAACATCACCACGACCACTCAACATCATCATGTTCNNNNNNNNNNANNNNNNNNNNANACAACAACAACAACCACGGCTAGTGCTAGTGTTTCAACACCGGAGACCACAGGATGTATTGGTGGAGACGCATCCACTGGAAGATGGCCTAGACAAGAAACTCTTACTCTTCTTGAGATCAGATCTCGTCTTGACCCTAAATTTAAAGAAGCTAATCAAAAGGGTCCTTTATGGGATGAAGTCTCTAGCTAG 456 0.3991 MTTDLRQLVNGTRSTHFPSIPATAEDFFPGHRNLTALLTNSQQTHHQNEQQQQYEMMMLGRGVVLEDFNNITTTTQHHHVXXXXXXXXTTTTTTASASVSTPETTGCIGGDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSS 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme95299g00001 151 MobiDBLite consensus disorder prediction 92 108 - -
Trme95299g00001 151 PANTHER FI21293P1 57 150 - -
Trme95299g00001 151 MobiDBLite consensus disorder prediction 92 118 - -
Trme95299g00001 151 Gene3D - 117 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme95299g00001 Trme-Chr95299 28 582 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme95299g00001 68 150 Trihelix Transcription Factor Family AT3G10000 47.423 8.12e-22 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trme95299g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme95299g00001 - - vvo:131644681 200.675