Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme95293g00001 ATGGCAATTGACCTCCTTGGACCAAGTCTTGAAGACCTGTTTAACTATTGCAATAGGAAATTCTCTCTGAAAACAGTTCTGATGCTTGCAGATCAGCTACTAAACAGAGTTGAGTACATGCACTCCCGGGGTTTCCTGCACCGTGATATAAAGCCTGACAACTTTTTAATGGGATTAGGCCGCAAAGCAAATCAGATTGTGATCAAAGCTGTTACATTTAAATCAGAGGATTTGATGGAGACTTCAATGTTGCTGTAA 258 0.407 MAIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLLNRVEYMHSRGFLHRDIKPDNFLMGLGRKANQIVIKAVTFKSEDLMETSMLL 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme95293g00001 85 Gene3D Transferase(Phosphotransferase) domain 1 1 69 - -
Trme95293g00001 85 Pfam Protein kinase domain 12 58 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme95293g00001 85 SUPERFAMILY Protein kinase-like (PK-like) 3 68 IPR011009 -
Trme95293g00001 85 PANTHER CASEIN KINASE-RELATED 1 67 - -
Trme95293g00001 85 ProSiteProfiles Protein kinase domain profile. 1 85 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme95293g00001 85 ProSitePatterns Serine/Threonine protein kinases active-site signature. 45 57 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme95293g00001 Trme-Chr95293 77 533 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme95293g00001 12 57 MAP Kinase Kinase Kinase AT1G62400 42.000 8.73e-07 43.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Trme95293g00001 Pkinase 1.6e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme95293g00001 K08960 - cann:124893033 137.117