Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme95227g00001 ATGAAGATTGTGTCTTCATCTGACCCAGATATATTGATGGGTTGGGATATTCAAGGGAGTTCTCTTGGTTTTCTAGCAGAAAGGGCTTCACATCTTGGTTTGGGATTACTTAATGATTTGTCTCGCACTCCATCTAATTCCTGGATTAATTCTCAAGACACCAAAACATCTGAAAAAAGTATCTTGGAACCGGACATCTCGGGTACTCCTAGTCTAGATTGTTGTGCGCAAGAAAGTTCAATAATTGAGGATGAATGGGGACGTACACATGCTAGCGGAGTTCATGTAGGTGGAAGAATTGTCCTTAACTTATGGAGATTGATTCGTGGAGAAGTTAAGCTGAATTTGTATTCAGTTGAAGCTGTTGCTGAAGCTGTATTGAGGCGTAAAGTTCCTTCACTTAACCACAAGGTGCTGACAAAATGGTTTTCAAGTGGTCCAGGGAAAGCAAGATATCAGTGTATCAAATATGTTATGGATAGAGCAAAGCTGAACCTTGAGATATTAAACCAACTTGATATG 522 0.3985 MKIVSSSDPDILMGWDIQGSSLGFLAERASHLGLGLLNDLSRTPSNSWINSQDTKTSEKSILEPDISGTPSLDCCAQESSIIEDEWGRTHASGVHVGGRIVLNLWRLIRGEVKLNLYSVEAVAEAVLRRKVPSLNHKVLTKWFSSGPGKARYQCIKYVMDRAKLNLEILNQLDM 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme95227g00001 174 Gene3D - 1 172 IPR036397 GO:0003676
Trme95227g00001 174 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 1 174 IPR030559 GO:0006281|GO:0016035|GO:0019985
Trme95227g00001 174 SUPERFAMILY Ribonuclease H-like 2 172 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme95227g00001 Trme-Chr95227 131 652 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme95227g00001 3 172 Core DNA Replication Machinery Family AT5G63960 22.941 2.94e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme95227g00001 K02350 - vum:124820999 301.982