Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme95219g00001 CTTGGCCTTGGATTTACATATGGACTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGGTTCTTGGTTATACATGGAAAAGCTAACGGTGGGGAAATTATAACAGCTCTGTTTGCTGTGATTTTAAGCGGCTTGGGATTAAACCAAGCAGCGACAAATTTCTACTCATTTGATCAAGGGCGAATAGCTGCCTATAGACTATTTGAGATGATAAGCCGGTCATCCTCATCTTTTGATCACGACGGAAGTGCTCCTGTGTCTGTACAAGGAAATATAGAGTTTCGGAATGTTTACTTCAGTTATCTTTCACGCCCTGAAATCCCTATCTTAAGTGGGTTTTATCTCACGGTTCCTGCTAAGAAAACTGTGGCACTTGTTGGCAGAAATGGTTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGGTTCTATGATCCAACATTAG 451 0.4124 LGLGFTYGLAICSCALQLWVGRFLVIHGKANGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSFDHDGSAPVSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKTVALVGRNGSGKSSIIPLMERFYDPTL 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme95219g00001 150 Gene3D - 84 149 IPR027417 -
Trme95219g00001 150 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 61 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme95219g00001 150 SUPERFAMILY ABC transporter transmembrane region 4 74 IPR036640 GO:0005524|GO:0016020
Trme95219g00001 150 Pfam ABC transporter 115 149 IPR003439 GO:0005524
Trme95219g00001 150 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 149 IPR027417 -
Trme95219g00001 150 PANTHER ABC TRANSPORTER B FAMILY 1 149 IPR039421 -
Trme95219g00001 150 Gene3D ABC transporter type 1, transmembrane domain 2 83 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme95219g00001 Trme-Chr95219 126 683 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme95219g00001 1 149 Calmodulin-binding Proteins AT2G36910 45.695 4.43e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme95219g00001 K05658 - gmx:100819266 286.574