Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme95162g00001 ATGATTGCATCAAGGCAAATATTGCGCCTTGTGTCCATTTTCCAGTACTTATTGAGGTTATATCTTATTTATCCTCTATCATCTGAAATCACCAAGGCAAATGGAGTAATGATGGAAAAAGCTTGGGCTGGTGCAGCTTATAATTTGACACTCTATATGCTTGCTAGTCATGTTTTAGGATCTACCTGGTACCTGTTATCAATTGAAAGACAAGATGAATGTTGGAAGAAAGCTTGTACACTTGAATATCCACATTGTCGGTATCATTATCTTGATTGTCAAAGCATAAGCGATCCAAATAGAAATGCTTGGCTTAGATCAAGCAATCTATCAGGACTATGTGATCAGAACAGTGACTTCTTTCAGTTTGGAATTTTTGCTGATGCTCTTACATTGGAAATAACTGGCTCAAAATTCTTAAACAAATACTATTACTGCCTTTGGTGGGGATTGAGGAATCTAAG 464 0.3664 MIASRQILRLVSIFQYLLRLYLIYPLSSEITKANGVMMEKAWAGAAYNLTLYMLASHVLGSTWYLLSIERQDECWKKACTLEYPHCRYHYLDCQSISDPNRNAWLRSSNLSGLCDQNSDFFQFGIFADALTLEITGSKFLNKYYYCLWWGLRNL 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme95162g00001 154 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 5 154 - -
Trme95162g00001 154 Pfam Ion transport protein 14 153 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme95162g00001 Trme-Chr95162 16 659 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme95162g00001 1 154 Ion Channels AT2G28260 55.844 1.20e-64 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme95162g00001 K05391 - gmx:100815543 285.804