Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme95036g00001 | GGAAGAGGAACCAATGTTCATATTGCTAATGGAGGATGTATTACAATTCAGTATGTTACTAATGTTATCATTCATGGTCTTCATATTCATGATTGTGTACCAACTGGTAATGCTATGGTGAGAAGCTCAGAAACACATTTTGGTTGGAGAACTATGGCTGATGGTGATGCTGTTTCGATCTTCGGTTCAAGTCATATTTGGGTTGATCATAATTCTTTATCTCATTGTGCTGATGGTCTTGTTGATGCTGTCATGGGATCAACCGCTATAACCATTTCTAACAACCATTTCACTCACCACAATGAGGTGTATCCGGTGTTTGATACTTGTCAGTGTCGAACACCGACACATGTTAGTGGTGATTCTGTTAGGACACAGTGA | 381 | 0.3963 | GRGTNVHIANGGCITIQYVTNVIIHGLHIHDCVPTGNAMVRSSETHFGWRTMADGDAVSIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVYPVFDTCQCRTPTHVSGDSVRTQ | 126 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme95036g00001 | 126 | Gene3D | - | 1 | 109 | IPR012334 | - | |
| Trme95036g00001 | 126 | SMART | amb_all | 1 | 125 | IPR002022 | - | |
| Trme95036g00001 | 126 | PANTHER | PECTATE LYASE 18-RELATED | 1 | 104 | IPR045032 | GO:0030570 | |
| Trme95036g00001 | 126 | Pfam | Pectate lyase | 3 | 103 | IPR002022 | - | |
| Trme95036g00001 | 126 | SUPERFAMILY | Pectin lyase-like | 1 | 103 | IPR011050 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme95036g00001 | Trme-Chr95036 | 1 | 658 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme95036g00001 | 1 | 103 | Polysaccharide Lyase | AT1G04680 | 92.233 | 4.93e-65 | 201 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme95036g00001 | K01728 | - | thj:104801050 | 215.312 |