Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme95008g00001 GCAAAAAGAATAAAAGAAAGCATAGAAGAGAGTGGGTTTAAGGTTAATGAGGTTCATGATCATGACCAAGATATATCGGTGTGCCGAGTTAGGATTAAAGGAATGGCATGTACAAGTTGTTCTGAGTCTGTTGAGAGAGCACTTCAAATGATTGATGGAGTGAAAAGGGCAATTGTTGGTTTAGCATTAGAGGAGGCAAAAGTGCATTATGATCCTAGCCTTGCCGATCCTGAAAAGATAATTGAAGCGGTCGAAGATGCGGGTTTTGGAGCAGAGCTTATTAGTTCCGGGAATGATGCGAACAAAGTTCATCTAAAACTCGAAGGGATTGATTCTGAAGAAGATGCTAATGTGTTAGTGTCTTATCTTGA 371 0.4016 AKRIKESIEESGFKVNEVHDHDQDISVCRVRIKGMACTSCSESVERALQMIDGVKRAIVGLALEEAKVHYDPSLADPEKIIEAVEDAGFGAELISSGNDANKVHLKLEGIDSEEDANVLVSYL 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme95008g00001 123 ProSitePatterns Heavy-metal-associated domain. 32 61 IPR017969 GO:0046872
Trme95008g00001 123 Gene3D - 26 99 - -
Trme95008g00001 123 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 2 122 - -
Trme95008g00001 123 FunFam Copper-transporting ATPase HMA5 25 96 - -
Trme95008g00001 123 ProSiteProfiles Heavy-metal-associated domain profile. 26 92 IPR006121 GO:0046872
Trme95008g00001 123 Pfam Heavy-metal-associated domain 29 89 IPR006121 GO:0046872
Trme95008g00001 123 SUPERFAMILY HMA, heavy metal-associated domain 23 97 IPR036163 GO:0046872
Trme95008g00001 123 CDD HMA 30 92 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme95008g00001 Trme-Chr95008 334 704 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme95008g00001 4 119 Primary Pumps ATPases AT1G63440 45.763 1.09e-32 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme95008g00001 K17686 - gmx:100793894 192.2