Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme949996g00001 TTTGCCGGAAAGCAGCTTGAGGACGGCCGTACCCTCGCCGATTACAATATCCAGAAGGAGTCCACGCTTCATCTTGTTCTCCGTCTGCGTGGAGGTATGCAGATCTTTGTGAAGACCCTTACCGGAAAGACTATTACTCTTGAGGTTGAAAGCTCTGACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAGCAGAG 221 0.5113 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme949996g00001 73 ProSiteProfiles Ubiquitin domain profile. 1 32 IPR000626 GO:0005515
Trme949996g00001 73 Gene3D - 1 32 - -
Trme949996g00001 73 SUPERFAMILY Ubiquitin-like 1 32 IPR029071 -
Trme949996g00001 73 PRINTS Ubiquitin signature 64 73 IPR019956 -
Trme949996g00001 73 PRINTS Ubiquitin signature 43 63 IPR019956 -
Trme949996g00001 73 ProSiteProfiles Ubiquitin domain profile. 33 73 IPR000626 GO:0005515
Trme949996g00001 73 Pfam Ubiquitin family 35 73 IPR000626 GO:0005515
Trme949996g00001 73 Pfam Ubiquitin family 1 30 IPR000626 GO:0005515
Trme949996g00001 73 FunFam Ubiquitin-like protein 33 62 - -
Trme949996g00001 73 PANTHER UBIQUITIN 33 73 - -
Trme949996g00001 73 SUPERFAMILY Ubiquitin-like 32 73 IPR029071 -
Trme949996g00001 73 Gene3D - 33 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme949996g00001 Trme-Chr949996 8 228 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme949996g00001 33 73 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 1.02e-23 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme949996g00001 K08770 - qsu:111983172 145.591