Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme94860g00001 | GATTCGGTTTCTGCTGATGATAATGATAATGATAATTCGGTTGATGTTGATGTTAAAGTTTCGATGGAGATTGAAAATGCTGAGGATTCTGATCGGGAAGAGTCTTCGAATGGACCGGTTTCGTCTCAGGGATCGGGAAATGGTGGATCGGGTGTATATGAAGCGATGAATTCGCCTTCGCATGATTCTGGCCGTTATGAGAGGGATATTTCGTCTTCTCGTGAACATGCAATTGTGGAAGAGGGTGTGAAATTGGAAGGGATTGTTAAAGGTTGTGATTTGAAGAGGAAGAAAGAAAGTAGTCATGAAAGTGCTGAGACTAGAACTCCGAAATGTAGCAGGAGATCGTCTTCGATGGAAACCAAGATTCAACAACAACAGCAGCAGCAACAAGCTCAATCTCAATCTGGTTTTGATGGTATTGAAGATGAGGATGAGAAGAGGAAGGCAAGGTTGATGAGGAATAGAGAAAGTGCACAGCTTTCTAGACAGAGGAAGAAGCATTATGTGGAGGAGCTTGAGGAGAAAGTAAGATCAATGCATTCAACAATTGCTGATTTGAGTAGTAAGATTACTTATGTTATGGCTGAGAATGCTACACTTAGACAACAATTGAGTGGTGGTGTGATGTGTCCACCTCCTCCGCCGGGTGCTGGGATGTACCCTCATCCTCCAATGGGACCTATGCCTTATCCTTGGATGCCTTGTGC | 710 | 0.4366 | DSVSADDNDNDNSVDVDVKVSMEIENAEDSDREESSNGPVSSQGSGNGGSGVYEAMNSPSHDSGRYERDISSSREHAIVEEGVKLEGIVKGCDLKRKKESSHESAETRTPKCSRRSSSMETKIQQQQQQQQAQSQSGFDGIEDEDEKRKARLMRNRESAQLSRQRKKHYVEELEEKVRSMHSTIADLSSKITYVMAENATLRQQLSGGVMCPPPPPGAGMYPHPPMGPMPYPWMPCA | 237 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme94860g00001 | 237 | SMART | brlzneu | 143 | 207 | IPR004827 | GO:0003700|GO:0006355 | |
| Trme94860g00001 | 237 | Coils | Coil | 170 | 190 | - | - | |
| Trme94860g00001 | 237 | PANTHER | BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTOR F-RELATED | 7 | 229 | - | - | |
| Trme94860g00001 | 237 | MobiDBLite | consensus disorder prediction | 12 | 35 | - | - | |
| Trme94860g00001 | 237 | Gene3D | - | 145 | 208 | - | - | |
| Trme94860g00001 | 237 | MobiDBLite | consensus disorder prediction | 1 | 167 | - | - | |
| Trme94860g00001 | 237 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 145 | 205 | IPR004827 | GO:0003700|GO:0006355 | |
| Trme94860g00001 | 237 | MobiDBLite | consensus disorder prediction | 140 | 167 | - | - | |
| Trme94860g00001 | 237 | MobiDBLite | consensus disorder prediction | 116 | 138 | - | - | |
| Trme94860g00001 | 237 | CDD | bZIP_HY5-like | 148 | 199 | - | - | |
| Trme94860g00001 | 237 | MobiDBLite | consensus disorder prediction | 36 | 57 | - | - | |
| Trme94860g00001 | 237 | SUPERFAMILY | Leucine zipper domain | 147 | 205 | IPR046347 | GO:0003700|GO:0006355 | |
| Trme94860g00001 | 237 | MobiDBLite | consensus disorder prediction | 61 | 115 | - | - | |
| Trme94860g00001 | 237 | FunFam | bZIP transcription factor 49 | 146 | 208 | - | - | |
| Trme94860g00001 | 237 | Pfam | bZIP transcription factor | 146 | 205 | IPR004827 | GO:0003700|GO:0006355 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme94860g00001 | 39 | 236 | bZIP Transcription Factor Family | AT2G40950 | 51.010 | 3.61e-34 | 127 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | bZIP | Trme94860g00001 | bZIP_1 | 1.6e-12 | CL0018 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme94860g00001 | K25783 | - | gmx:100127362 | 220.705 |