Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme94825g00001 ATGTATTTATTTCATGGACAGACAGGACAGACGGTTGCTATTAAGAAGATTCGGATTGGCAAGCAGAAAGAAGGGGTGAATTTTACAGCTCTTAGAGAAATTAAATTGCTTAAAGAACTCAAAGATCCAAATATAATTGAGTTGATTGATTGCTTCCCGCATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACAGACCTTGAAGCTGTCATAAGAGATCGAAATATTTTCCTTTCACCTGGTGACATTAAATCTTACCTTCAAATGACGCTAAAAGGTCTTGCTCATTGTCACAAAAAATGGGTATTGCACAG 320 0.3656 MYLFHGQTGQTVAIKKIRIGKQKEGVNFTALREIKLLKELKDPNIIELIDCFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPGDIKSYLQMTLKGLAHCHKKWVLH 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme94825g00001 106 ProSiteProfiles Protein kinase domain profile. 1 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme94825g00001 106 SUPERFAMILY Protein kinase-like (PK-like) 4 106 IPR011009 -
Trme94825g00001 106 Pfam Protein kinase domain 5 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme94825g00001 106 PANTHER CELL DIVISION PROTEIN KINASE 6 106 - -
Trme94825g00001 106 Gene3D Phosphorylase Kinase; domain 1 4 66 - -
Trme94825g00001 106 SMART serkin_6 2 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme94825g00001 Trme-Chr94825 117 436 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme94825g00001 7 106 Core Cell Cycle Gene Families AT1G66750 83.000 5.55e-60 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Trme94825g00001 Pkinase 6.2e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme94825g00001 K02202 - cave:132172227 195.667