Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme948105g00001 GGAGCTGCACAAGGTTTGTGCTACATGCATAACGATTGCTCTCCGCCTATTGTTCATCGAGATATGAAAACAAGTAACATCCTTTTGGATTCTCAATTCAATGCAAAAGTTGATGATTTTGGTTTGGCTAGGATATTGGTCAAGCCAGAAGAACTCGCCACCATATCGGCTGTGGCTGGAACATTCGGCTATATTGCTCCAGGTGAATAA 210 0.4286 GAAQGLCYMHNDCSPPIVHRDMKTSNILLDSQFNAKVDDFGLARILVKPEELATISAVAGTFGYIAPGE 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme948105g00001 69 ProSitePatterns Serine/Threonine protein kinases active-site signature. 17 29 IPR008271 GO:0004672|GO:0006468
Trme948105g00001 69 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 67 - -
Trme948105g00001 69 Gene3D Transferase(Phosphotransferase) domain 1 1 68 - -
Trme948105g00001 69 SUPERFAMILY Protein kinase-like (PK-like) 2 67 IPR011009 -
Trme948105g00001 69 ProSiteProfiles Protein kinase domain profile. 1 69 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme948105g00001 69 Pfam Protein kinase domain 3 67 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme948105g00001 Trme-Chr948105 1 210 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme948105g00001 1 67 Receptor kinase-like Gene Family AT5G25930 72.059 2.43e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme948105g00001 Pkinase 3.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme948105g00001 - - gmx:100785907 125.561