Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme94764g00001 ATGGATGTGCCACCGTATGCTACCGGAGTACATGAAGGAAAGAATCCGACGGTGCCGATTTTCGGGAGCATGGATGAAAAATTGTTGGATGCAATGTGTGATAAACTAAAACCAGTCCTTTATACCGAGAAAAGTTGCGTTGTTCGTGAAGGTGATCCGGTGGACGAAATGCTCTTCATCATGCGCGGAAGACTTGCGACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTTAACTCTTCTGAGCTTAAGGCTGGTGATTTTTGTGGAGAGGAGCTTCTAACATGGGCCTTGGATCCTACCCCCTCCTCAAACTTACCTATTTCGACTATTACTGTAGAAACTATTACAGAAGTTGAAGCTTTTGCTCTCATGCATGATGACTTGAAGATTGTTGCTTCTCAATTTCGCCGTCTTATTAATAGAAAACAACTGCAACACACTTTCAGGTAA 453 0.4327 MDVPPYATGVHEGKNPTVPIFGSMDEKLLDAMCDKLKPVLYTEKSCVVREGDPVDEMLFIMRGRLATATTNGGRTGFFNSSELKAGDFCGEELLTWALDPTPSSNLPISTITVETITEVEAFALMHDDLKIVASQFRRLINRKQLQHTFR 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme94764g00001 150 CDD CAP_ED 20 140 IPR000595 -
Trme94764g00001 150 Gene3D Jelly Rolls 18 138 IPR014710 -
Trme94764g00001 150 FunFam Cyclic nucleotide-gated ion channel 1 18 136 - -
Trme94764g00001 150 SMART cnmp_10 20 144 IPR000595 -
Trme94764g00001 150 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 17 148 - -
Trme94764g00001 150 Pfam Cyclic nucleotide-binding domain 41 131 IPR000595 -
Trme94764g00001 150 SUPERFAMILY cAMP-binding domain-like 18 138 IPR018490 -
Trme94764g00001 150 ProSiteProfiles cAMP/cGMP binding motif profile. 20 104 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme94764g00001 Trme-Chr94764 2 666 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme94764g00001 18 150 Ion Channels AT5G53130 76.692 2.37e-65 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme94764g00001 K05391 - gmx:100795201 226.098