Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme94643g00001 GATCTGTTACAGATTGCTCCTGCTGATTTAGAAGCCGTGTTAATTTTGCATCCTGAAATAGTTGATGCTGCTGTTACAGCTGCCAAAGATGAAGAAACTGGGGAGATTCCAGTGGCGTTTGTGGTCAAGGAGGTTGGAAGTGTACTTTCTCCAAAGCATGTTATCGATTACGTTGCTGAGCAGGTTGCTCCATACAAGAAAGTTCGGAAAGTGTTCTTCACCGACAAGATACCGAGGTCACCAACTGGGAAGATCCTCCGAAAGGAACTCAGGCATTGCTTGACTTCTAAACTCTAA 297 0.4478 DLLQIAPADLEAVLILHPEIVDAAVTAAKDEETGEIPVAFVVKEVGSVLSPKHVIDYVAEQVAPYKKVRKVFFTDKIPRSPTGKILRKELRHCLTSKL 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme94643g00001 98 Gene3D - 3 97 IPR045851 -
Trme94643g00001 98 Pfam AMP-binding enzyme C-terminal domain 10 84 IPR025110 -
Trme94643g00001 98 SUPERFAMILY Acetyl-CoA synthetase-like 4 93 - -
Trme94643g00001 98 FunFam 4-coumarate--CoA ligase 2 1 97 - -
Trme94643g00001 98 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme94643g00001 Trme-Chr94643 3 500 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme94643g00001 3 98 Monolignol Biosynthesis Gene Families AT4G19010 66.667 2.68e-36 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme94643g00001 K01904 - gmx:100804808 162.54