Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9445g00001 AGGGCTTTGCTCCACTTCCTTGATCCTAACAAGTTCAAGAGCAAGGATGAGTTTGTTCAAAACTATAAAAATCTGAGTTCTTTCCATGAGAATGAGCTTGCAAATCTTCATATGGAATTGAGGCCACACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCTTTACCCCCCAAAATTGAGCGTATCCTTCGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAACTTTCAAAATTTAAACAAAGGAGTTCGCGGGAATCAGGTTTCTCTTCTAAATATTGTGGTGGAATTGAAAAAGTGTTGCAACCATCCCTTCCTATTTGAAAGTGCTGATCATGGCTATGGTGGGGACTCTGGAGGCAGTGACAACAGTAAACTTGAGAGAATTGTCTTTAGCAGTGGCAAGCTTGTGATACTTGATAAGCTGCTTGTTAGATTGCATGAGAGTAAACATCGTGTTCTGATTTTCTCTCAGTGGCTCTCTGGAGAATTAGTGAGATCACACTTTTGA 534 0.397 RALLHFLDPNKFKSKDEFVQNYKNLSSFHENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFQNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGGSDNSKLERIVFSSGKLVILDKLLVRLHESKHRVLIFSQWLSGELVRSHF 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9445g00001 177 Gene3D - 53 170 IPR027417 -
Trme9445g00001 177 Pfam SNF2-related domain 2 114 IPR000330 GO:0005524|GO:0140658
Trme9445g00001 177 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 2 167 - -
Trme9445g00001 177 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 168 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9445g00001 Trme-Chr9445 2 1523 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9445g00001 40 143 RAD5 or RAD16-like Gene Family AT5G22750 29.565 2.06e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme9445g00001 SNF2_N 1.5e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9445g00001 K11367 - gmx:100808039 313.923