Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9419g00001 ATGGCTGCATTTCTGCATGCTATCAATGTATTGTTTGTTTGTATTTCTGAGTGGCCACTGGCCAGATGTTTAGATGCAAACTTGATTGAGATCCCGGTTGAAGTTGAGGGTCCATCTCATCACTATTATCATTTTGCTTTCTTCACCTCCAGAAAAATCGCAGCACATGAAGAGTTGACCTGGGACTATGGCATCGACTTTGATGACGATGATCAGCCTGTCGAGCTGTTCCGGTGCAAATGTGGCAGTAAATTCTGCAGGAATATGAAGCGATCAAATAGTAAGTTTAATCTTCTATTTGTATGTAATGTGCATAAGTTTGCTTCACTTTCGACATAA 339 0.4071 MAAFLHAINVLFVCISEWPLARCLDANLIEIPVEVEGPSHHYYHFAFFTSRKIAAHEELTWDYGIDFDDDDQPVELFRCKCGSKFCRNMKRSNSKFNLLFVCNVHKFASLST 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9419g00001 112 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 22 94 - -
Trme9419g00001 112 Pfam SET domain 26 64 IPR001214 GO:0005515
Trme9419g00001 112 SUPERFAMILY SET domain 25 87 IPR046341 -
Trme9419g00001 112 Gene3D SET domain 12 89 IPR046341 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9419g00001 27 87 Su(var)3-9 homologs AT1G73100 38.462 1.68e-06 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trme9419g00001 SET 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9419g00001 - - gmx:100788602 144.05