Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme94072g00001 CTTGACTCAATGCAGAAAATCGATGAGAAAACCGACGTGTACAGTTTCGGCGTGATCCTACTTGAGGTGCTGACAGGAAGGCAACCATTAGATCCAACTCTGCCAGGAGGGATACACTTGGTTCAATGGGTTAAGAATCAATTGGCAAGCAAAGAAAACCCATTAGAAATTCTTGACTCAAAGCTGAGAGAGAGGACTGAACTTACTGCTATGCATGAAATACTACAAACTCTAGCTGTGTCAATTTTATGTGTCAGTACAAAAGCTTATGAACGTCCAACGATGAAAGACGCCATTGCAATGCTCAACCAATTTCGATATTTTAAAATGTATTAA 336 0.4018 LDSMQKIDEKTDVYSFGVILLEVLTGRQPLDPTLPGGIHLVQWVKNQLASKENPLEILDSKLRERTELTAMHEILQTLAVSILCVSTKAYERPTMKDAIAMLNQFRYFKMY 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme94072g00001 111 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 7 104 - -
Trme94072g00001 111 Gene3D Transferase(Phosphotransferase) domain 1 1 109 - -
Trme94072g00001 111 ProSiteProfiles Protein kinase domain profile. 1 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme94072g00001 111 Pfam Protein tyrosine and serine/threonine kinase 5 100 IPR001245 GO:0004672|GO:0006468
Trme94072g00001 111 SUPERFAMILY Protein kinase-like (PK-like) 5 107 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme94072g00001 Trme-Chr94072 146 481 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme94072g00001 3 110 Receptor kinase-like Gene Family AT5G56040 65.741 8.50e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme94072g00001 PK_Tyr_Ser-Thr 1.2e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme94072g00001 - - cam:101492613 174.481