Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme94007g00001 ATGATAGGGGACTTGGAAGAAATCAATGAAATTGTGAATCTTGTTCGCAACTTACGTGATTATGTGATGAAAACCGAGTGCTTTGCAGTCAAAAGTGGCGTCTCTTTCCCTCCGTACTTTCGCTGTCCTTTATCATTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCCGGTCAAACATACGAGAGGCAATCTATCCAAAAGTGGCTTGACCATGGGATGACTGTTTGTCCAAAGACTCGTCAACGACTTACTCATACAAATCTCGTTCCTAATTATACCGTYAAAGCTATGTCCCCTCTGATCATTTATTGTCTCAAGAATTATCTAGTGGCAATTCAATTTCAAGATCATGTCTTCAAACTGGAAATGCATTTGAAGAACGAAGTGGTGATAATTCTTTCAGATCAAATCGAGAATGCAATGGATGCCAAAATGTAG 441 0.3968 MIGDLEEINEIVNLVRNLRDYVMKTECFAVKSGVSFPPYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDHGMTVCPKTRQRLTHTNLVPNYTVKAMSPLIIYCLKNYLVAIQFQDHVFKLEMHLKNEVVIILSDQIENAMDAKM 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme94007g00001 146 ProSiteProfiles U-box domain profile. 35 109 IPR003613 GO:0004842|GO:0016567
Trme94007g00001 146 PANTHER U BOX DOMAIN-CONTAINING 6 100 - -
Trme94007g00001 146 Pfam U-box domain 37 98 IPR003613 GO:0004842|GO:0016567
Trme94007g00001 146 SMART Ubox_2 39 102 IPR003613 GO:0004842|GO:0016567
Trme94007g00001 146 FunFam RING-type E3 ubiquitin transferase 36 105 - -
Trme94007g00001 146 CDD RING-Ubox_PUB 37 89 IPR045210 -
Trme94007g00001 146 SUPERFAMILY RING/U-box 34 98 - -
Trme94007g00001 146 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 107 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme94007g00001 Trme-Chr94007 150 666 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme94007g00001 4 98 U-box Gene Family AT3G54790 63.158 2.26e-40 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme94007g00001 - - mtr:25484253 191.045