Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme93g00001 ATGGCTCTGACTTTTGAACATCGTAATATGTTTTCAAACATTGATGAGATAAATTCTGATAGAGCAACATGGAATTTTAAGGCTAAGGTCATAAGACTTTGGCAAGTGAATGATTTTAATCGAACTCATGTGCCTTTTTCTATTGAAATGGTGTTAATGGATTCAGATGGTGCTAAGATTCATGCCACTATTAAAAAAACTCTGATTTACAAGTTTAAACATGACATAATTGAGGGAAAAATTTATTCTTTTGAAAATCTTGGTGTTGCTTCTAATACTGGAGCTTATAGGACAACACATCACCCATACAAACTGAATTTTCAGTTTGGCTCCTTGGTTCAGAGGCTGTCCAACTGTGATATTTCGAAATCTCCATTTACCTTTGTTCCAATTGGTGATATTTTGAGCGGTTGTTATGACACTGACTTTTTAGTGGATGTTATTGGTTTGTTGACCGAGATTGGCCAGGAGCGTGAGATCACTAATCAAAATGGTAGCACAACGAAGCTGAATGTTATTTCCTTGGAAGCTGATGGGCATAAGCTTCAATGTACACTTTTTGGTCCATATGTTGATGAACTAAATACCTTTGTTGGAGCTGGTGATCTGAACAATGCTGTTGTTATTGTTCAGCTTGCAAAAGCTAAGATGTTCCAAGTTATTGATTGGGAAATTGTAGAGAAAATACATATACAGAACTGCCTGAATTGTTCTGTTTTGATATTTAACCCAAGCTGTGAGGAAAGTGTAACCTTTAGAGCAAGTCTCAATGGTTCTGAGGAGACTCCATCTCCATTGACCTTTACTCAACTCACTGTTGAGTCAAGTGTTCAACCACTTGATGAGTTTGTCTACAATACTCCAAGGATTACCTTGCAAGGTCTCAGGGATGTTACAAGTGACTCAACATATGTTGTTGCTGCAACTGTCAAGAGGATTTTAAATCCGGATAGTTATTGGTATACATCGTGTTTGTGCGGCAAGGCTGCTATATCAGATTCAAGGATGTGGTATTGTGAAAAGTGTAACAGGCATGTTCCAAAAGTTGTTCCTAGGTTTTGTGTCAAAGTGAGAGTCATGGATGATACTGATTCTGCCATTTTTGCAACTTCCCTATTCAATATGTCTTGTGCTGATATGATTCAAATTGGAGAAACTGCTGTTGGTGAAAGAATTGTGCCACCTCAAATCGATGACACATTGGTTGATCAAACCTGGCTTTTTAAGGTTGAAGCTAAACCTTCTCATAATCCTAGGTTTGAGCAATCTTTCCGTGTTAGAAAGATTTGTACCAATGAGAGTATAATTAAGCAGTTTAAGGAGAAGTGGGATAATGAGGATGCTTTGAATCTTAAAATTGCAAATGAGGATGGATCTTTGAGTACTTTGCTGGAAAAAGCGAAAGATGTGTATGTTGGTGGGTCGTCAAATGTCCTTAGTGAGGAGGTTGAAAACTTTAGTGGAGATTCTGATAAGGGAAAAGCTTTGATTTTGGATGGATCACCTGTTGACGTTTCGCAAGATTTGATGATGAAATTTTCATCTGCTGTCGTTAATCTTGGCGATGATTTTGATAATACTCCTGTTTCTGTTAAACCAATGACATCTGTTGTGAAGCAAATTACATGTGCTGATGATGTGAACCCAATTACCGTTGCCGATCGTGTGAAGCCAATTAACTCTGTTGGATCTGCAAAGCCAATCAACTCTGCTGGATCTGTGAATCAAGTCAACTCTGCTGGTGCTGCGAAGCCATCTTGCTCTGCTGTCAATGTTCAACAATCTGCTGGGAATGTGAAGCCTCAACAATCTGCTGCTCCTGTTAAATCAATGAGTACAGCTGTCAAACAAGTCCCTACTTCTGCTGCTGTCAAACCAGTTCACTCTTCTGCTGGTGATGATTTGAGCTTCCAAGCTTCAGGCTTTGGTAGGCCATCTGGACAGCGGAAGAAAACTGGTGCTAAGAGGGTGTCCCCTCAACATGAAGATCGAGTTGTTGATGATGAAAATGCTCCTATCAAGTTGTTGAAGAGGGCAGTCAAGATTGAGAAGATTTAA 2058 0.3916 MALTFEHRNMFSNIDEINSDRATWNFKAKVIRLWQVNDFNRTHVPFSIEMVLMDSDGAKIHATIKKTLIYKFKHDIIEGKIYSFENLGVASNTGAYRTTHHPYKLNFQFGSLVQRLSNCDISKSPFTFVPIGDILSGCYDTDFLVDVIGLLTEIGQEREITNQNGSTTKLNVISLEADGHKLQCTLFGPYVDELNTFVGAGDLNNAVVIVQLAKAKMFQVIDWEIVEKIHIQNCLNCSVLIFNPSCEESVTFRASLNGSEETPSPLTFTQLTVESSVQPLDEFVYNTPRITLQGLRDVTSDSTYVVAATVKRILNPDSYWYTSCLCGKAAISDSRMWYCEKCNRHVPKVVPRFCVKVRVMDDTDSAIFATSLFNMSCADMIQIGETAVGERIVPPQIDDTLVDQTWLFKVEAKPSHNPRFEQSFRVRKICTNESIIKQFKEKWDNEDALNLKIANEDGSLSTLLEKAKDVYVGGSSNVLSEEVENFSGDSDKGKALILDGSPVDVSQDLMMKFSSAVVNLGDDFDNTPVSVKPMTSVVKQITCADDVNPITVADRVKPINSVGSAKPINSAGSVNQVNSAGAAKPSCSAVNVQQSAGNVKPQQSAAPVKSMSTAVKQVPTSAAVKPVHSSAGDDLSFQASGFGRPSGQRKKTGAKRVSPQHEDRVVDDENAPIKLLKRAVKIEKI 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme93g00001 685 MobiDBLite consensus disorder prediction 626 663 - -
Trme93g00001 685 Gene3D - 11 118 IPR012340 -
Trme93g00001 685 SUPERFAMILY Nucleic acid-binding proteins 126 259 IPR012340 -
Trme93g00001 685 CDD RPA1_DBD_B_like 146 256 - -
Trme93g00001 685 Gene3D - 282 440 IPR012340 -
Trme93g00001 685 Pfam Replication factor-A C terminal domain 306 384 IPR013955 -
Trme93g00001 685 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Trme93g00001 685 CDD RPA1_DBD_C 304 429 IPR047192 -
Trme93g00001 685 SUPERFAMILY Nucleic acid-binding proteins 290 428 IPR012340 -
Trme93g00001 685 SUPERFAMILY Nucleic acid-binding proteins 11 117 IPR012340 -
Trme93g00001 685 CDD RPA1_DBD_A_like 27 113 - -
Trme93g00001 685 Gene3D - 119 264 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme93g00001 Trme-Chr93 1400 4477 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme93g00001 14 363 Core DNA Replication Machinery Family AT2G06510 22.493 7.38e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme93g00001 - - tpra:123915358 1031.17