Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme93993g00001 CTTCATAAGAAGGAGACATGCGAAGCTGTCACCATCATTGAAACTCCTCCAGTTGTTGTTGTTGGAGTGGTGGGATACGTGAAGACACCACGAGGCCTTCGCACACTGAATACTGTTTGGGCTCAGCATCTTAGTGAAGATATCAAGCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNCTCAGCTTGAGAAATTGAAAAAGTATGCCACTGTCATTCGTGTTCTTGCTCATACTCAGGTACCAAGATCGTGCTTGTTGGATTTTAGTTGA 336 0.3185 LHKKETCEAVTIIETPPVVVVGVVGYVKTPRGLRTLNTVWAQHLSEDIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLEKLKKYATVIRVLAHTQVPRSCLLDFS 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme93993g00001 111 Coils Coil 83 90 - -
Trme93993g00001 111 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 2 104 IPR045077 GO:0003735|GO:0005840|GO:0006412
Trme93993g00001 111 Coils Coil 41 49 - -
Trme93993g00001 111 Gene3D - 17 107 - -
Trme93993g00001 111 Pfam Ribosomal protein L3 2 102 IPR000597 GO:0003735|GO:0005840|GO:0006412
Trme93993g00001 111 SUPERFAMILY Translation proteins 3 104 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme93993g00001 Trme-Chr93993 75 410 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme93993g00001 1 102 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 58.824 2.33e-25 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme93993g00001 K02925 - gmx:100782902 99.3673