Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme93914g00001 GCTCGCGATCCCAAAACAGAGGACGAGGAAGCAGAATATCAGTGTGACATTGAGGGATGCACCATGAGTTTTGAATCAAAACAAGAATTGTTGCACCATAAGAGAAATGTCTGTCCAGTAAAAGGTTGCGGAAAAAAGTTTTTCTCACACAAATATCTGGTGCAGCACCGGCGAGTTCATGAAGATGACCGTCCCCTGAAATGCCCCTGGAAGGGGTGCAAGATGTCTTTCAAGTGGGCATGGGCTCGAACTGAGCATATTCGAGTCCACACTGGTGCACGTCCTTATGCGTGTGCCGAACCAGGTTGTGGGCAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGTAAGACTGGGCATTTAGCAAAGAAGATTCGTCAATAG 390 0.4667 ARDPKTEDEEAEYQCDIEGCTMSFESKQELLHHKRNVCPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYACAEPGCGQTFRFVSDFSRHKRKTGHLAKKIRQ 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme93914g00001 129 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 95 IPR013087 -
Trme93914g00001 129 Gene3D Classic Zinc Finger 36 63 - -
Trme93914g00001 129 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 65 IPR013087 -
Trme93914g00001 129 SUPERFAMILY beta-beta-alpha zinc fingers 52 94 IPR036236 -
Trme93914g00001 129 SUPERFAMILY beta-beta-alpha zinc fingers 84 118 IPR036236 -
Trme93914g00001 129 Gene3D Classic Zinc Finger 88 128 - -
Trme93914g00001 129 Gene3D Classic Zinc Finger 2 35 - -
Trme93914g00001 129 Pfam Zinc finger, C2H2 type 37 60 IPR013087 -
Trme93914g00001 129 Pfam Zinc finger, C2H2 type 13 35 IPR013087 -
Trme93914g00001 129 SMART c2h2final6 66 90 IPR013087 -
Trme93914g00001 129 SMART c2h2final6 96 122 IPR013087 -
Trme93914g00001 129 SMART c2h2final6 36 60 IPR013087 -
Trme93914g00001 129 SMART c2h2final6 13 35 IPR013087 -
Trme93914g00001 129 Gene3D Classic Zinc Finger 64 87 - -
Trme93914g00001 129 PANTHER ZINC FINGER PROTEIN ZIC AND GLI 10 119 - -
Trme93914g00001 129 ProSitePatterns Zinc finger C2H2 type domain signature. 68 90 IPR013087 -
Trme93914g00001 129 ProSitePatterns Zinc finger C2H2 type domain signature. 98 122 IPR013087 -
Trme93914g00001 129 FunFam Probable lysine-specific demethylase ELF6 93 122 - -
Trme93914g00001 129 FunFam Probable lysine-specific demethylase ELF6 63 92 - -
Trme93914g00001 129 ProSitePatterns Zinc finger C2H2 type domain signature. 38 60 IPR013087 -
Trme93914g00001 129 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 127 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme93914g00001 11 129 C2H2 Transcription Factor Family AT3G48430 80.672 8.04e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme93914g00001 zf-C2H2 0.0043 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme93914g00001 - - psat:127084261 271.552