Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme93855g00001 GATGACGGTTTAAACAGAATCGTGACGAAGAAGCTACTCGAGAGGCTCGGTTGTCAAGTAACAACAGTTTCATCAGGATATGAGTGTCTAGGTGCTATAAGTGGCTCTGGTGGTAACTCGTTCAAAATTCTCATGTTGGATATTCACATGCCTGAAATGGATGGTTTTGAAGTCGCGGCTAGGATCAGAAAGTTCAACGGCCCTAATTGGCCTTTGATCATAGCTCTTATAGCAAATGCAGAAGAGCAAGTGAAGGATAGATGCATGCTGGCAGGAATGAATGGTGTGATTCAGAAACCAATCCTCCTTCATCAGATAGCGGATGAACTTAGAACAGTCCTACATCGTGCGGGTGAAAAACTGTGA 366 0.4399 DDGLNRIVTKKLLERLGCQVTTVSSGYECLGAISGSGGNSFKILMLDIHMPEMDGFEVAARIRKFNGPNWPLIIALIANAEEQVKDRCMLAGMNGVIQKPILLHQIADELRTVLHRAGEKL 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme93855g00001 121 ProSiteProfiles Response regulatory domain profile. 1 114 IPR001789 GO:0000160
Trme93855g00001 121 SMART REC_2 1 110 IPR001789 GO:0000160
Trme93855g00001 121 CDD REC_ETR-like 1 110 - -
Trme93855g00001 121 Gene3D - 1 120 - -
Trme93855g00001 121 Pfam Response regulator receiver domain 1 109 IPR001789 GO:0000160
Trme93855g00001 121 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 1 118 - -
Trme93855g00001 121 SUPERFAMILY CheY-like 1 116 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme93855g00001 Trme-Chr93855 1 366 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme93855g00001 1 119 Miscellaneous Gene Families AT3G04580 60.504 4.99e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme93855g00001 Response_reg 1.5e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme93855g00001 K14509 - gmx:100101892 191.045