Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme93757g00001 ATGGGATCAGACAGTCCACAACAAACAATGAGAAATGATCAAACTTATGGAACTTCTCACCAAGGTGAACCAGAAAATACAGGACTCCAAGGGGCATATTCTCAATACCGTTCTGGATCTGTTCCAGTAGGATTCTATGCTTTGCAAAGGGAGAACATTTTTCCAGAGAGACCTGATCAGCCTGAATGCCAATTCTACATGAAGACCGGAGATTGCAAATTTGGTGCAGTCTGTCGTTTTCACCATCCACGCGAGAGGACGGTTCCTGCCCCTGATTGTATTTTGAGTCCCATTGGCCTTCCTTTGCGTCCTGTGAGTTGA 321 0.4548 MGSDSPQQTMRNDQTYGTSHQGEPENTGLQGAYSQYRSGSVPVGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERTVPAPDCILSPIGLPLRPVS 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme93757g00001 106 SUPERFAMILY CCCH zinc finger 60 86 IPR036855 GO:0046872
Trme93757g00001 106 ProSiteProfiles Zinc finger C3H1-type profile. 57 85 IPR000571 GO:0046872
Trme93757g00001 106 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 59 84 IPR000571 GO:0046872
Trme93757g00001 106 SMART c3hfinal6 57 84 IPR000571 GO:0046872
Trme93757g00001 106 Gene3D - 18 93 - -
Trme93757g00001 106 PANTHER PROTEIN PHOSPHATASE RELATED 8 104 - -
Trme93757g00001 106 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme93757g00001 Trme-Chr93757 357 677 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme93757g00001 54 88 C2H2 Transcription Factor Family AT5G16540 37.143 8.43e-07 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme93757g00001 zf-CCCH 9e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme93757g00001 - - gmx:100786261 204.527