Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme93722g00001 ATGAAATCTGGCATATGTAAATTTGGGGAAAGATGCAAGTATCATCACCCAATCGACCGCTCAACAGCATCACTGTCAAAACTGCAATCAAATGTTAAACTTACTGCTGCAGGCTTACCAAGAAGAGAGGGTGTTGAGATTTGCCCATATTATTTGAAAACTGCCACGTGCAAGTTTGGCGCGACATGCAAGTTTGATCATCCACCACCAGGAGAAGTGATGGAGTTGGCCAAGTCGCAAGGAACTTCTACAACCAATGGAGGAGAAACAGAGACCAACGTAGATGTGTCTGGTTCTGCTCCGGAACAATAG 312 0.4487 MKSGICKFGERCKYHHPIDRSTASLSKLQSNVKLTAAGLPRREGVEICPYYLKTATCKFGATCKFDHPPPGEVMELAKSQGTSTTNGGETETNVDVSGSAPEQ 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme93722g00001 103 MobiDBLite consensus disorder prediction 77 103 - -
Trme93722g00001 103 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 1 17 IPR000571 GO:0046872
Trme93722g00001 103 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 44 69 IPR000571 GO:0046872
Trme93722g00001 103 ProSiteProfiles Zinc finger C3H1-type profile. 1 19 IPR000571 GO:0046872
Trme93722g00001 103 PANTHER PROTEIN PHOSPHATASE RELATED 1 88 - -
Trme93722g00001 103 ProSiteProfiles Zinc finger C3H1-type profile. 42 70 IPR000571 GO:0046872
Trme93722g00001 103 FunFam zinc finger CCCH domain-containing protein 37 1 83 - -
Trme93722g00001 103 SUPERFAMILY CCCH zinc finger 45 69 IPR036855 GO:0046872
Trme93722g00001 103 SMART c3hfinal6 1 18 IPR000571 GO:0046872
Trme93722g00001 103 SMART c3hfinal6 42 69 IPR000571 GO:0046872
Trme93722g00001 103 Gene3D - 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme93722g00001 Trme-Chr93722 33 683 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme93722g00001 1 70 C3H Transcription Factor Family AT1G04990 51.429 2.85e-19 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme93722g00001 zf-CCCH 2.1e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme93722g00001 - - gmx:100801417 148.288