Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme936g00001 AACTCTGATATATTCTTGTTCTGGTCTTATGGCAACTCCTTTGATATTAAGGGACCAACTATCACTGAGCTCGCAATCAAGGCAATAGAAGCCATAGGGGGAGAAGTTGAGAGCTTCATTCTTCAGCGTCGCTTTAAGTATTTCCCTCATGTTAGCAGCCAAGATATGAAAAACGGGTTCTATGAAAAGTTGGAATCAGAGCTCCAAGGTTCAAGGAATACTTATTATGTCGGTGGACTTATGGCATTTGAGCTCACAGAGAGAAATTCATCTTATGCCATGGCTCTTATGTGCAAGAACTTTGCAAATAGAAGTGATTTGCCAGTGTTTCCATATACTAAGAGTTTGTTTCCTTTGCAAACTGAGTTTCAGAGAAAGGAACCTAAACAACTAGCTGAATTGCCTGGCGTGCAATTTCCCGATTTGCCGACTTTGAATAGCTATTTAAAGCACTGGGGAACTCATCCAGTCACTCAAGACAGAACCCTTTATAGTTGGATAAATGAAGAAGGGAAGGTGACAGGTAAGAGGACATATAGAGAGCAACATTTATATGCTTCTTGCATTGCAAGTAAGCTCTTAAAAAGCCAAAAGCCAGTTATCAAGCCTGGCGACAAGGTTCTTCTAGTCTACGTTCCCGGACTAGATTTCATCGATGCATTCTTTGCATGCTTAAGAGCTAAAGTTATACCAGTCCCAGTTCTTCCCCCAGATCCCATGCAAAGAGGTGGACAAGCACTTTTGAAAATTGAGAACATTGCCAAGTCATGTGGCATAGTTGCAATTTTATCAACAGTAGCTTATCACTCAGCAGTCCGAGCAGGTTCAGTGAAAAACTTTATCACATTGAAAAATGGGAAATCTTCAGCTCGGTGGCCGAATCTTCTGTGGTTGCACACTGATACTTGGATCAGTAATTCAAGAAGTTCTGCGATGGAGGATTTATACGGTGATCAGTGTGAATCTCAGCCTGCTGATATATGTTTCTTGCAGTTTACCTCAGGCTCGACCGGTGATGCTAAAGGAGTCATGATCACCCATGGAGGTCTAATTCACAATGTAAAGCTGATGCAAAGAAGATACAAGAGCACCTCAAGGACTGTACTAGTGAGCTGGCTTCCTCAGTATCATGACATGGGGCTGATCGGAGGACTTTTTACAGCTCTTGTTAGCGGTGGAACTGCCCTTCTGTTTTCACCAATGACATTCATCAAGAAACCACTCTTATGGATAGAAACGATGAGCAAGTATCAAGCAACTCACAGTGCTGGACCTAACTTTGCTTTCGAGTTAGTAGTTCGAAGGTTAGAGTCTGACAAGGATAAACTTCAGAACCTAGACCTTTCCTCCATGATTTTTCTTATGGTTGCTGCTGAACCAGTGAGACAGAAGACTCTGAAAAAATTTCTTGAGCTAACCGGTCATTATGGCTTGTCTCAAAAGGCGATGGCTCCTGGATACGGCTTAGCAGAGAATTGTGTGTTTGTCAGTTGTGCATTTGGAGAAGGCAATCCTATTCTTGTTGACTGGCAGGGACGAGTTTGTTGCGGATATATTCATCCAGGGAGTGCAGACGTTGACATCAGAATAGTTGACCCAGATGGTGGCGAAGAGCTTCAGGAAGATGGAAAAGAAGGAGAAATCTGGATCAGTAGTCCAAGTGCAGGAATAGGATACTGGGGGAAGGAAGAATTGAGTCAGGCAACTTTTCAAAATCAGCTTCCGAACCATCCTCGACGCGTCTACACAAGAACTGGAGACTTGGGAAGGATAATAGATGGAAAGCTATTCATCACTGGAAGAATCAAAGATCTTATCATTGTTGCTGGAAGAAACATCTATTCCTCAGATGTTGAAAAGACGGTTGAGAGTTCGTCTGAATTTCTCCGTCCAGGATGCTGTGCTGTCATTGGTGTCCCTGAAGAGACTTTATCAGCCAAAGGAATTTCCTTGCCAGATGGTTCTGATCAGGTTGGTTTGGTTGTGATTGCAGAACTGAGGGATGGTAAACCAGTTAGCAAGGATGTGGTTGAAGGTATTCAGGCTCGTGTGGCGGAAGAACATGGAGTCAATGTTGCTTCTGTAAAGTTGATCAAGCCTAGAACCATCAGCAAAACAACATCAGGAAAAATTAGAAGGTTTGAATGTCTCAAACAGTTTGCAGATGGAACACTGAATTTGGTACCACAACCAGTTCTGACAAAGAAAACACTGGTAAGGTCATTCACTACAGGAACATGTAAAGAAGGAAGAACACCCCGGGCACGGCTAGCGAATAGTACACCTATAACTAGTCCGAGAATCAGTAACAAGGAAATTATGGAATTCTTGAAAAGGCTTATTTCTGAGCAGGCTGGAATTTCAGTAAGCAACATCTCTGTCACAGACAACATGTCAACCTATGGAATGGATTCAATCGGTGTGGTTAAAGCAACTCAAAAACTCTCAGATTTCCTTGGAGTTCCAGTTGCAGCTATAGATGTTTTCAGTGCATCCTGCATTCAAGAATTGGCCAACTTCTCAGAGAATCTTCTATTGAAGTCACAACCTCACCTTATGAGCAATCCATCCTATGCTCCAGAAGCTGAAACTGAATCTACTGAATTTTTTGTGGATGTGTCCAACTCTCACCGGTGGAGTATATGTTTACTTCAACTCTTGTCACTTGTTTTCATTTCTATCCTTCTGGTTTCTCCTGCTTATCTTTCCATCACTACTTTTCAAAGTCTCATCACAAGTTTCACTAAACCAGCATATGGAATTCCTTGGTCAAACTATATATTTTCACTTGCTTTGGCACCACTTTCTTGGATCCTTTGCATTGCTTCTACATGCATTTGCATTTCATTTTTTGGAAATTCTTTCTTGAGGCCAAACTATGCTCTTACTCCTGAAATGTCCATCTATTCAATAGCCTTTGTCAAGTGGTGGGCACTTTATAAAAGCCAGGAAATTTCATCCAAAGTTCTGGCTACACACCTCAAAGGAACAGTGTTTCTGAAGTACTGGTTTGAGATACTAGGTGCAAGAATTGGATCCTCAGTTTTGCTTGACACGGTCGACATCACAGACCCGTCTCTAGTTTCAATTGGTGATGAAGCTGTCATTTCTGAAGGGGTTTTGGTTCAAAGCCATGAGGTAAAGAATGGAATTCTAAGTCTCCATCCTATTAGGATCGGCCGAAATTCTTCCATTGGACCTTATGCTGTTATTCAAAAAGGAAGCTTTATTAAAGAAGGAGCTGAGGTACAACCACTACAAAAAGTTGAAGGAGGCCAACATGTTCTCAATCCTACAAAGCTTAATAATATTAAAGAG 3318 0.4183 NSDIFLFWSYGNSFDIKGPTITELAIKAIEAIGGEVESFILQRRFKYFPHVSSQDMKNGFYEKLESELQGSRNTYYVGGLMAFELTERNSSYAMALMCKNFANRSDLPVFPYTKSLFPLQTEFQRKEPKQLAELPGVQFPDLPTLNSYLKHWGTHPVTQDRTLYSWINEEGKVTGKRTYREQHLYASCIASKLLKSQKPVIKPGDKVLLVYVPGLDFIDAFFACLRAKVIPVPVLPPDPMQRGGQALLKIENIAKSCGIVAILSTVAYHSAVRAGSVKNFITLKNGKSSARWPNLLWLHTDTWISNSRSSAMEDLYGDQCESQPADICFLQFTSGSTGDAKGVMITHGGLIHNVKLMQRRYKSTSRTVLVSWLPQYHDMGLIGGLFTALVSGGTALLFSPMTFIKKPLLWIETMSKYQATHSAGPNFAFELVVRRLESDKDKLQNLDLSSMIFLMVAAEPVRQKTLKKFLELTGHYGLSQKAMAPGYGLAENCVFVSCAFGEGNPILVDWQGRVCCGYIHPGSADVDIRIVDPDGGEELQEDGKEGEIWISSPSAGIGYWGKEELSQATFQNQLPNHPRRVYTRTGDLGRIIDGKLFITGRIKDLIIVAGRNIYSSDVEKTVESSSEFLRPGCCAVIGVPEETLSAKGISLPDGSDQVGLVVIAELRDGKPVSKDVVEGIQARVAEEHGVNVASVKLIKPRTISKTTSGKIRRFECLKQFADGTLNLVPQPVLTKKTLVRSFTTGTCKEGRTPRARLANSTPITSPRISNKEIMEFLKRLISEQAGISVSNISVTDNMSTYGMDSIGVVKATQKLSDFLGVPVAAIDVFSASCIQELANFSENLLLKSQPHLMSNPSYAPEAETESTEFFVDVSNSHRWSICLLQLLSLVFISILLVSPAYLSITTFQSLITSFTKPAYGIPWSNYIFSLALAPLSWILCIASTCICISFFGNSFLRPNYALTPEMSIYSIAFVKWWALYKSQEISSKVLATHLKGTVFLKYWFEILGARIGSSVLLDTVDITDPSLVSIGDEAVISEGVLVQSHEVKNGILSLHPIRIGRNSSIGPYAVIQKGSFIKEGAEVQPLQKVEGGQHVLNPTKLNNIKE 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme936g00001 1106 Gene3D - 48 96 IPR036188 -
Trme936g00001 1106 PANTHER DISCO-INTERACTING PROTEIN 2 DIP2 -RELATED 55 1073 - -
Trme936g00001 1106 Pfam Phosphopantetheine attachment site 776 840 IPR009081 -
Trme936g00001 1106 Gene3D - 762 844 IPR036736 -
Trme936g00001 1106 Pfam AMP-binding enzyme 171 608 IPR000873 -
Trme936g00001 1106 Gene3D - 4 47 - -
Trme936g00001 1106 SMART Phosphopantetheine attachment site 774 845 IPR020806 GO:0031177
Trme936g00001 1106 SUPERFAMILY ACP-like 768 852 IPR036736 -
Trme936g00001 1106 ProSitePatterns Putative AMP-binding domain signature. 330 341 IPR020845 -
Trme936g00001 1106 Gene3D Hexapeptide repeat proteins 979 1089 - -
Trme936g00001 1106 CDD FAAL 150 722 IPR040097 GO:0008610
Trme936g00001 1106 SUPERFAMILY Acetyl-CoA synthetase-like 144 731 - -
Trme936g00001 1106 ProSiteProfiles Carrier protein (CP) domain profile. 771 845 IPR009081 -
Trme936g00001 1106 Gene3D - 131 602 IPR042099 -
Trme936g00001 1106 Gene3D - 603 731 IPR045851 -
Trme936g00001 1106 SUPERFAMILY Trimeric LpxA-like enzymes 994 1092 IPR011004 -
Trme936g00001 1106 ProSitePatterns Phosphopantetheine attachment site. 800 815 IPR006162 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme936g00001 Trme-Chr936 12 3530 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme936g00001 326 641 Monolignol Biosynthesis Gene Families AT1G20480 27.445 1.57e-21 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme936g00001 - - gsj:114374875 1878.99