Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9363g00001 ATGCTTAGCCAACCCAACTCAGTAAACTCGCCGACCAACCCACTGAGTCAACTCGTTCAGAACATGTTCTCCCACAACAGCAGCAGCAGCAGCAACAACAGTATCATCATGCTAGCAGCAATCATTTCTCTGCTACTAGTAATCCTTTTTGTCTTCCTACTCCACATCTATGCCAAATGGTTCCTATCTCAGTCCAACTCAGAGACAAATACTCGCCGCCGGCAAGCTCCGGTGAACATCTCCGACGTTCCAATTACTTCCAACTTCCACCACCATTTCAACATTGAGAGTTTCGAAACACAACCCAAAGGACTTGACTCAACAATAGTTTCGACAATTCCAATGTTTGTGTCGGAAGAAAAAACAGAGGAGTTAGAATGTGTGATATGTTTGAGTTATATTGAAAAGGGTGAGATTGGAAGAAAGTTACCAAAATGTGGACATGTTTTTCATGTTGAATGCATTGATATGTGGTTGAATTCACATTGCAATTGTCCAATTTGTAGAGGTTTGATTGTTGAGAATGATTCTCATGTTGTTGAGATTGTGATTGAAAGTTCAAGTTATGAGATTAGTGAAAGTGGTTCTGTTTCTGTATCAGAAAGTTCTTCTTTGTCTTTGTTTGGTTTCTCTTTGAAGAGAATTCTTAGCAAAGTTTTTCTTTCTTCTCATGTAAANGAATTAGATGATGGTTCATAA 699 0.3891 MLSQPNSVNSPTNPLSQLVQNMFSHNSSSSSNNSIIMLAAIISLLLVILFVFLLHIYAKWFLSQSNSETNTRRRQAPVNISDVPITSNFHHHFNIESFETQPKGLDSTIVSTIPMFVSEEKTEELECVICLSYIEKGEIGRKLPKCGHVFHVECIDMWLNSHCNCPICRGLIVENDSHVVEIVIESSSYEISESGSVSVSESSSLSLFGFSLKRILSKVFLSSHVXELDDGS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9363g00001 232 CDD RING-H2_EL5-like 126 169 - -
Trme9363g00001 232 SUPERFAMILY RING/U-box 117 175 - -
Trme9363g00001 232 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Trme9363g00001 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 181 - -
Trme9363g00001 232 SMART ring_2 127 168 IPR001841 -
Trme9363g00001 232 Pfam Ring finger domain 126 169 IPR001841 -
Trme9363g00001 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 173 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9363g00001 Trme-Chr9363 708 1406 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9363g00001 23 169 C3H Transcription Factor Family AT2G42360 37.748 3.82e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9363g00001 - - vra:106764505 202.216