Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9353g00001 TTGCTTCGGGGCTTGAAATATCTTCACTCAGCTAACATCCTTCATCGTGACTTGAAACCTGGGAATCTTCTAATTAATGCAAATTGTGACCTAAAAATATGTGATTTTGGGTTAGCACGCACCAACTGCAGCAAGAACCAGTTCATGACGGAGTATGTTGTCACTCGGTGGTATAGGGCACCAGAACTCCTACTTTGCTGTGACAACTATGGGACATCTATTGATGTATGGTCAGTGGGATGCATCTTTGCTGAGCTTCTTGGACGAAAACCTATTTTCCCCGGTTCAGAGTGCCTCAACCAACTAAAACTTATTATCAATATCCTTGGTAGTCAAAGGGAGGAGGATATTGAATTTATTGATAATCCAAAGGCAAAGAGGTACATCAAATCGCTTCCATATTCTCCTGGAACCCCCTTTTCCAGACTTTACCCCAATGCACATCCATTGGCAATTGATCTACTGGCAAAGATGCTTGTTTTTGATCCCACAAAGAGGATTAGTGTCACGGAAGCGCTTCAACACCCTTTCATGGCCTCTCTCTATGATCCTAATTGTGACCCTCCTGCCATCATTCCAATTGATCTTGACATTGATGAGGATCTAGGGGAAGAGGTGATAAGGGAGTTGATGTGGAAGGAAATGGTTCATTACCATCCTGAATCAGCTATGGAAAATGCAGAGTTATGCTCTTAA 696 0.4267 MLRGLKYLHSANILHRDLKPGNLLINANCDLKICDFGLARTNCSKNQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAELLGRKPIFPGSECLNQLKLIINILGSQREEDIEFIDNPKAKRYIKSLPYSPGTPFSRLYPNAHPLAIDLLAKMLVFDPTKRISVTEALQHPFMASLYDPNCDPPAIIPIDLDIDEDLGEEVIRELMWKEMVHYHPESAMENAELCS 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9353g00001 231 ProSitePatterns Serine/Threonine protein kinases active-site signature. 13 25 IPR008271 GO:0004672|GO:0006468
Trme9353g00001 231 Gene3D Transferase(Phosphotransferase) domain 1 1 190 - -
Trme9353g00001 231 SMART serkin_6 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme9353g00001 231 Pfam Protein kinase domain 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme9353g00001 231 FunFam Mitogen-activated protein kinase 1 204 - -
Trme9353g00001 231 SUPERFAMILY Protein kinase-like (PK-like) 1 185 IPR011009 -
Trme9353g00001 231 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 189 - -
Trme9353g00001 231 ProSiteProfiles Protein kinase domain profile. 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9353g00001 Trme-Chr9353 249 944 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9353g00001 1 229 MAP Kinase Gene Family AT1G10210 82.969 6.43e-147 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Trme9353g00001 Pkinase 1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9353g00001 K20535 - gmx:100798863 450.669