Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme935158g00001 GCTTCCATGAACCCAGCAGTGTCTTTTGGGCCTGCTGTTGTTAGCTGGACATGGGCTAATCACCGGGTCTATTGGGTCGGCCCGTTGACTGGTTCTGCTATTGCTGCAGTTGTCTATGAAATTTTCTTCTTCACCCCTAGCTCTTATGAACAGTTACCTGTCATAGATTATTAA 174 0.4655 ASMNPAVSFGPAVVSWTWANHRVYWVGPLTGSAIAAVVYEIFFFTPSSYEQLPVIDY 57
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme935158g00001 57 PANTHER AQUAPORIN-8 1 52 IPR034294 -
Trme935158g00001 57 Pfam Major intrinsic protein 1 39 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme935158g00001 57 Gene3D Glycerol uptake facilitator protein. 1 57 IPR023271 -
Trme935158g00001 57 SUPERFAMILY Aquaporin-like 1 50 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme935158g00001 Trme-Chr935158 1 174 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme935158g00001 1 57 Major Intrinsic Protein MIP AT2G36830 66.667 6.69e-23 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme935158g00001 K09873 - gmx:547794 104.375