Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme935046g00001 ATGGCTCCTAAACAACCGAGTACGGGTCTTTTCGTTGGATTGAACAAAGGTCACGTTGTCACAAAGAAGGAATTGGCTCCTCGTCCCTCAGCTCGCAAGGGAAAAACTAGCAAAAGGGTTCACTTTGTGAGGAATCTCATTAGAGAGGTTGCTGGTTTTGCACCTTACGAGAAGCGTATCACTGAGTTGCTCAAGGTTGGAAAAGACAAGAGGGCGTTGAAGGTT 225 0.4667 MAPKQPSTGLFVGLNKGHVVTKKELAPRPSARKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKV 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme935046g00001 75 ProSitePatterns Ribosomal protein L36e signature. 55 65 IPR000509 GO:0003735|GO:0005840|GO:0006412
Trme935046g00001 75 Pfam Ribosomal protein L36e 8 75 IPR000509 GO:0003735|GO:0005840|GO:0006412
Trme935046g00001 75 PANTHER 60S RIBOSOMAL PROTEIN L36 1 75 IPR000509 GO:0003735|GO:0005840|GO:0006412
Trme935046g00001 75 Gene3D 60S ribosomal protein L36 1 75 IPR038097 -
Trme935046g00001 75 FunFam 60S ribosomal protein L36 1 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme935046g00001 Trme-Chr935046 5 229 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme935046g00001 1 75 Cytoplasmic Ribosomal Protein Gene Family AT3G53740 81.333 9.24e-39 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme935046g00001 K02920 - cave:132188821 148.288