Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme93494g00001 ATGAAATGGAAGGGGGTGAGAAAAGGTGTGTCGAAGAATTTCGGAACTGGGTTTGTTGCTTGTCCTAGAGAGTTTAATTACAGAGAATTGAAATCTGCGACACGAGAGTTTCATCCTAGTAGAATCGTTGGTCATGGTTCGTTTGGTACTGTGTATAAAGCTTTCTTTATATCTTCTGGAACAATTGCTGCAGTGAAAAGATCGAGGCATTCYCATGAAGGAAAAACCGAGTTTCAWTCTGAATTGTCTATCATTGCTGGTTTAAGGCACAAAAATTTGGTTCAGTTGTTAGGTTGGTGTGTTGAGAAAGGAGAGTTGCTTCTTGTTTATGATTTCATGCCTAATGGAAGCTTAGACAAGATGCTTTACAAGGAACCTGAGAGAGGGAAATTGTTGACTTGGTCTCATAGGGTTAACATTGTTATTGGTTTGGCTTCTGTTTTGGTTTATCTCCATCAAGAAT 463 0.3888 MKWKGVRKGVSKNFGTGFVACPREFNYRELKSATREFHPSRIVGHGSFGTVYKAFFISSGTIAAVKRSRHSHEGKTEFXSELSIIAGLRHKNLVQLLGWCVEKGELLLVYDFMPNGSLDKMLYKEPERGKLLTWSHRVNIVIGLASVLVYLHQE 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme93494g00001 154 Pfam Protein tyrosine and serine/threonine kinase 40 153 IPR001245 GO:0004672|GO:0006468
Trme93494g00001 154 Gene3D Phosphorylase Kinase; domain 1 8 112 - -
Trme93494g00001 154 FunFam receptor-like protein kinase FERONIA 5 112 - -
Trme93494g00001 154 SUPERFAMILY Protein kinase-like (PK-like) 21 153 IPR011009 -
Trme93494g00001 154 ProSitePatterns Protein kinases ATP-binding region signature. 43 66 IPR017441 GO:0005524
Trme93494g00001 154 Gene3D Transferase(Phosphotransferase) domain 1 113 154 - -
Trme93494g00001 154 ProSiteProfiles Protein kinase domain profile. 37 154 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme93494g00001 154 PANTHER - 19 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme93494g00001 Trme-Chr93494 25 487 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme93494g00001 2 154 Receptor kinase-like Gene Family AT5G55830 65.806 6.76e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trme93494g00001 PK_Tyr_Ser-Thr 6.9e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme93494g00001 - - adu:107496163 265.774