Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme93363g00001 ATGGAAAAACATATCAATATAGAAGAAAGTGATGCTAATGAAAATTTTGCTACATCCTCAACAACATCATCAACTTCATCAAATTCAGATACATGCACCAGACACGACACAAAAGCCTCTCCAAAGGATTGCAAGAAGAGGAAAAGAAGTAGTGAAAGTGATGAAAATAATAGCAAATATCCAACTTATAGAGGAGTTAGGATGAGGAATTGGGGAAAATTTGTGTGCGAGATTCGCGAGCCGAAGAAAAAATCAAGAATATGGCTTGGAACATACCCTACAGCTGAAATGGCAGCTAGAGCACATGATGTAGCTGCTTTAGCTATAAAAGGTCATTCAGCATACCTTAATTTTCCTGAATTAGCAAAAGCACTTCCAAAGCCAATAAGTACTTCTCCAAAAGACATTCAAGCTGCAGCTGCAAAAGCAGCTAATAACACTTCATTTGAAGCTCATCAAGTTGAACCAAGACAAGAACATCATGATCAACATGCCTCATCTTCAAGTTCAACATTTACTAATGATGATGCTACATTGTTTGATTTGCCAGATCTTTTTCCTGATGATGGAAACAATGGACTTTGTTCTTATTCTTCAAAAAATTCTTCTTGGTATTTATGTTCTGTTGATAGTGGATTTAGGCTTGAGGAACCATCTTTTTGGGAGAAATACTAG 675 0.3644 MEKHINIEESDANENFATSSTTSSTSSNSDTCTRHDTKASPKDCKKRKRSSESDENNSKYPTYRGVRMRNWGKFVCEIREPKKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELAKALPKPISTSPKDIQAAAAKAANNTSFEAHQVEPRQEHHDQHASSSSSTFTNDDATLFDLPDLFPDDGNNGLCSYSSKNSSWYLCSVDSGFRLEEPSFWEKY 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme93363g00001 224 Gene3D AP2/ERF domain 62 120 IPR036955 GO:0003700|GO:0006355
Trme93363g00001 224 MobiDBLite consensus disorder prediction 152 172 - -
Trme93363g00001 224 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 38 189 - -
Trme93363g00001 224 MobiDBLite consensus disorder prediction 35 55 - -
Trme93363g00001 224 SUPERFAMILY DNA-binding domain 62 120 IPR016177 GO:0003677
Trme93363g00001 224 FunFam Ethylene-responsive transcription factor 2 62 120 - -
Trme93363g00001 224 Pfam AP2 domain 61 112 IPR001471 GO:0003700|GO:0006355
Trme93363g00001 224 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
Trme93363g00001 224 MobiDBLite consensus disorder prediction 1 62 - -
Trme93363g00001 224 CDD AP2 63 121 IPR001471 GO:0003700|GO:0006355
Trme93363g00001 224 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Trme93363g00001 224 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Trme93363g00001 224 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Trme93363g00001 224 MobiDBLite consensus disorder prediction 11 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme93363g00001 Trme-Chr93363 23 697 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme93363g00001 46 220 AP2-EREBP Transcription Factor Family AT2G44940 50.235 8.02e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme93363g00001 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme93363g00001 - - gmx:100801129 242.276