Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme93318g00001 TTAGCAGGGATGTGTTTGGATGACAAAGAGTGTGAAGGGTTGGAAGCAGATGAAGATGGAAATGGAAAAACAACACCTGCAAAATTAGCTTCTCACATGTTTTGCAAAACACTCACTGCCTCTGATACCAGCACTCACGGAGGGTTTTCTGTTCCTCGTCGAGCTGCTGAAGATTGTTTTCCTCCTTTGGATTATAAGCAAGAGAGACCCTCTCAAGAGCTTGTTGCAAAAGATCTGCATGGTGTGAACTGGAAATTTCGCCATATTTACAGAGGTAGATGA 282 0.4326 LAGMCLDDKECEGLEADEDGNGKTTPAKLASHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQERPSQELVAKDLHGVNWKFRHIYRGR 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme93318g00001 93 CDD B3_DNA 32 93 IPR003340 GO:0003677
Trme93318g00001 93 Pfam B3 DNA binding domain 34 92 IPR003340 GO:0003677
Trme93318g00001 93 Gene3D - 31 93 IPR015300 -
Trme93318g00001 93 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 92 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme93318g00001 93 SUPERFAMILY DNA-binding pseudobarrel domain 26 93 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme93318g00001 Trme-Chr93318 136 529 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme93318g00001 9 93 B3 DNA Binding Superfamily AT5G60450 75.294 1.08e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme93318g00001 B3 1.1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme93318g00001 - - smil:131000042 158.688