Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme93262g00001 CACGTTCAAACTTCACCACCACCAAAACCAAAACCAGAATCACACTCACACTCACATTCACATGCTTCAACAGTGACTACAACAACATCAAATCCAAAACCTTCTGCTTCTGCCACCGCCACTGCCACATCTCAGAATGTGAGAACAGTGCAGAAGACAGACACAACCATATTAGGAAANCCCTTTGAAGATATTAAAAAGTTCTATACTTTAGGTAAAGAATTGGGTAGAGGTCAATTTGGGATTACTTATTTTTGCACTGAGAATTCAACTGGCTTAAATTATGCTTGTAAATCTATATTAAAGAGGAAGCTTGTTTCTAAATCTGATAGAGAAGATATTAAGAGAGAGATTCAGATTTTGCAGCATTTATCTGGTCAACCTAACATTGTTGAATTTAAAGGTGCTTATGAGGATAGGTTTTCTGTGCATCTTGTCATGGAACTTTGTGCTGGTGGAGAGTTATTTGATAGAATCATTGCTCAGGGTCATTATTCAGAGAGAGCTGCTGCATCTATTTGTAGGGCTGTTGTTAATGTTGTGCACATTTGTCATTTCATGGGTGTATTGCATCGCGATTTAAAGCCCGAGAATTTCTTGCTTTCTAGTAAAGATGAAGGAGCAGCACTCAAAGCTACTGATTTTGGACTTTCTGTCTTCATTGAAGAAG 670 0.3806 HVQTSPPPKPKPESHSHSHSHASTVTTTTSNPKPSASATATATSQNVRTVQKTDTTILGXPFEDIKKFYTLGKELGRGQFGITYFCTENSTGLNYACKSILKRKLVSKSDREDIKREIQILQHLSGQPNIVEFKGAYEDRFSVHLVMELCAGGELFDRIIAQGHYSERAAASICRAVVNVVHICHFMGVLHRDLKPENFLLSSKDEGAALKATDFGLSVFIEE 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme93262g00001 223 Pfam Protein kinase domain 69 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme93262g00001 223 ProSitePatterns Protein kinases ATP-binding region signature. 75 102 IPR017441 GO:0005524
Trme93262g00001 223 MobiDBLite consensus disorder prediction 19 47 - -
Trme93262g00001 223 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Trme93262g00001 223 Gene3D Phosphorylase Kinase; domain 1 71 155 - -
Trme93262g00001 223 SUPERFAMILY Protein kinase-like (PK-like) 68 221 IPR011009 -
Trme93262g00001 223 ProSiteProfiles Protein kinase domain profile. 69 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme93262g00001 223 PANTHER SERINE/THREONINE-PROTEIN KINASE 63 220 - -
Trme93262g00001 223 SMART serkin_6 69 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme93262g00001 223 MobiDBLite consensus disorder prediction 1 47 - -
Trme93262g00001 223 FunFam Calcium-dependent protein kinase 1 71 154 - -
Trme93262g00001 223 Gene3D Transferase(Phosphotransferase) domain 1 156 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme93262g00001 Trme-Chr93262 48 717 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme93262g00001 29 223 EF-hand Containing Proteins AT4G04720 75.253 6.63e-104 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme93262g00001 Pkinase 3.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme93262g00001 K13412 - jre:108982097 316.235