Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme93254g00001 ATGGAACTATATAAGAAAAAATGTGAAGGACCAATTAAGACAGGCATAAGGCGAGGGATAGTAAGCGGATTTGGTTTTGGGATATCATTTTTCGTGTTGTATGCAGTTTATGCAACCAGTTTTTATGCTGGAGCGCGTCTCGTTGAGGATGGAAAATCTTCATTCTCAGACGTTTTTCGTGTATTTTTTGCCCTAAGTATGGCAGCTATCGGACTCTCTCAATCCGGGTCGTTGGTACCTGATTCAACTAAGGCAAAAAGTGCAGCTGCTTCTATATTTGCTATTCTTGATAGGAAATCACTCATAGATCCAAATGATGAATCAGGAATGACATTAGAAGAAGTCAAGGGAGAAATTGAGTTAAA 365 0.3918 MELYKKKCEGPIKTGIRRGIVSGFGFGISFFVLYAVYATSFYAGARLVEDGKSSFSDVFRVFFALSMAAIGLSQSGSLVPDSTKAKSAAASIFAILDRKSLIDPNDESGMTLEEVKGEIEL 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme93254g00001 121 Gene3D ABC transporter type 1, transmembrane domain 1 121 IPR036640 GO:0005524|GO:0016020
Trme93254g00001 121 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 106 IPR039421 -
Trme93254g00001 121 FunFam ATP-binding cassette protein subfamily B, member 2, putative 13 116 - -
Trme93254g00001 121 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 84 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme93254g00001 121 Pfam ABC transporter transmembrane region 2 67 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme93254g00001 121 SUPERFAMILY ABC transporter transmembrane region 2 103 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme93254g00001 Trme-Chr93254 1 493 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme93254g00001 1 121 Calmodulin-binding Proteins AT2G36910 36.885 3.34e-22 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme93254g00001 K05658 - gmx:100776122 186.037