Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme93241g00001 ATGGAAATTCTCCCTTCTGCATCATTCACACCAAACACCAATTGGTGTATGGAAGATAACAATACAACAAAATGGACACCTGAAGAGAACAAGCTATTTGAAAATGCTCTTGCAGTTCATGATAAGGATACACCGGATCGATGGCATAGAGTGGCGGAAATGATACCTGGAAAGACGGTCGGTGATGTGATGAAACAGTACAAGGAATTAGAAGATGATGTTTGTAATATTGAAGCTGGATTGATTCCAGTTCCTGGTTATAATACTCCTACTTCACCTTTTACCTTAGATTGGGTAAATAGTTCTGGTTATGATGGATTCAAAGGAAGTGGAAAGAGATCTCCTTTAGCTAGAGCAACTGAACATGAAAGGAAGAAAGGTGTTCCATGGACTGAAGAAGAACACAAGTAA 411 0.3917 MEILPSASFTPNTNWCMEDNNTTKWTPEENKLFENALAVHDKDTPDRWHRVAEMIPGKTVGDVMKQYKELEDDVCNIEAGLIPVPGYNTPTSPFTLDWVNSSGYDGFKGSGKRSPLARATEHERKKGVPWTEEEHK 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme93241g00001 136 ProSiteProfiles Myb-like domain profile. 17 71 IPR001005 -
Trme93241g00001 136 ProSiteProfiles SANT domain profile. 23 73 IPR017884 -
Trme93241g00001 136 CDD SANT 24 70 IPR001005 -
Trme93241g00001 136 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 18 136 IPR043363 -
Trme93241g00001 136 SMART sant 21 73 IPR001005 -
Trme93241g00001 136 MobiDBLite consensus disorder prediction 107 136 - -
Trme93241g00001 136 FunFam Transcription factor SRM1 17 84 - -
Trme93241g00001 136 Pfam Myb-like DNA-binding domain 23 68 IPR001005 -
Trme93241g00001 136 SUPERFAMILY Homeodomain-like 23 79 IPR009057 -
Trme93241g00001 136 Gene3D - 17 84 - -
Trme93241g00001 136 MobiDBLite consensus disorder prediction 115 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme93241g00001 Trme-Chr93241 64 474 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme93241g00001 Myb_DNA-binding 5.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme93241g00001 - - qsa:O6P43_013995 225.713