Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme93162g00001 ATGGTAGTGAAATCAATGAAGAAGAAGCTCAAATCGTTCAACATACTTTTTGAGGAAATATGCAGGGTTCAGTCTTTGTGGTTTATCTTGGATGAGCAGCTTAAGGACGAGATCATAATTTCTATTAAGAAAAAGTTGTTTCCAGCGTATGGAAACTTCATTGGGATGTTCCAGAAGAGTGTTAAGGAACTTGGAAAGCATTCTGATAAATATATTAAGTATGGAATGGAGGACGTTGAAGCAAGACTCCACAATTTGTTTCATGGAAGCAGTGCATCAACTGATAG 287 0.3693 MVVKSMKKKLKSFNILFEEICRVQSLWFILDEQLKDEIIISIKKKLFPAYGNFIGMFQKSVKELGKHSDKYIKYGMEDVEARLHNLFHGSSASTD 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme93162g00001 95 PANTHER EXOCYST COMPLEX PROTEIN EXO70 5 89 IPR004140 GO:0000145|GO:0006887
Trme93162g00001 95 SUPERFAMILY Cullin repeat-like 6 88 IPR016159 -
Trme93162g00001 95 Gene3D Exocyst complex component Exo70 2 91 - -
Trme93162g00001 95 Pfam Exo70 exocyst complex subunit 5 84 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme93162g00001 Trme-Chr93162 119 405 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme93162g00001 4 93 EXO70 exocyst subunit family AT5G58430 56.667 1.09e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme93162g00001 K07195 - gmx:100803694 125.946